From turkakin at ualberta.ca Wed Jun 22 16:54:07 2022 From: turkakin at ualberta.ca (Hava Turkakin) Date: Wed, 22 Jun 2022 16:54:07 -0400 Subject: [FLASH-BUGS] Possible bugs? Message-ID: Hello I am getting following notes during compilation. I am not sure if they are bugs, but I would appreciate it if you could have a look. I didn't get these messages before, but now I am trying to compile and run FLASH4.6 in a new server. I could compile but I am getting runtime error. I am not sure if they are connected to these notes. Here are the notes during compilation: ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type mpi_amr_restrict_fulltree.F90(69): remark #7920: The value was too small when converting to REAL(KIND=4); the result is in the denormalized range. [1.D-40] real,parameter :: tiny = 1.d-40 amr_prolong_gen_unk1_fun.F90(436): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 99 format ('[amr_prolong_gen_unk1_fun] PE=',I7,', ivar=',I3,', value=',1PG9.3) Driver_evolveFlash.F90(133): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. write (numToStr(1:), "(1PE12.6)") dr_simTime ----------------------------------^ Driver_evolveFlash.F90(139): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. write (numToStr(1:), "(1PE12.6)") dr_dt ----------------------------------------^ Driver_evolveFlash.F90(141): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. write (numToStr(1:), "(1PE12.6)") max(dr_dt,dr_dtSTS) ----------------------------------------^ Driver_evolveFlash.F90(155): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. write (numToStr(1:), "(1PE12.6)") dr_dt ----------------------------------------^ Driver_evolveFlash.F90(157): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. write (numToStr(1:), "(1PE12.6)") max(dr_dt,dr_dtSTS) ----------------------------------------^ ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type if [ -s "io_typeInterface.mod" -a "io_typeInterface.mod" -nt "io_typeinterface.mod" ];then ln -f io_typeInterface.mod io_typeinterface.mod;else test -f io_typeinterface.mod&&touch io_typeinterface.mod||:;fi mpif90 -ggdb -c -O2 -fdefault-real-8 -fdefault-double-8 -Wuninitialized -DMAXBLOCKS=1000 -DNXB=8 -DNYB=8 -DNZB=1 -DN_DIM=2 io_readData.F90 ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type Driver_computeDt.F90(813): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 902 format (1X, I7, 1X, ES10.4, 1x, F8.3, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) --------------------------^ Driver_computeDt.F90(813): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 902 format (1X, I7, 1X, ES10.4, 1x, F8.3, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) ------------------------------------------------^ Driver_computeDt.F90(813): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 902 format (1X, I7, 1X, ES10.4, 1x, F8.3, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) -------------------------------------------------------------------------^ Driver_computeDt.F90(813): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 902 format (1X, I7, 1X, ES10.4, 1x, F8.3, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) ------------------------------------------------------------------------------------^ Driver_computeDt.F90(812): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 901 format (1X, I7, 1X, ES10.4, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) --------------------------^ Driver_computeDt.F90(812): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 901 format (1X, I7, 1X, ES10.4, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) --------------------------------------^ Driver_computeDt.F90(812): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 901 format (1X, I7, 1X, ES10.4, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) ---------------------------------------------------------------^ Driver_computeDt.F90(812): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 901 format (1X, I7, 1X, ES10.4, 1x, ES10.4, ' | ', 11(:, 1X, ES11.5),1x,ES10.4) --------------------------------------------------------------------------^ Driver_computeDt.F90(807): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 806 format (1X, I7, 1x, ES10.4, 1x, F8.3, 1x, ES10.4, 2x, '(', ES9.3, ', ', & --------------------------^ Driver_computeDt.F90(807): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 806 format (1X, I7, 1x, ES10.4, 1x, F8.3, 1x, ES10.4, 2x, '(', ES9.3, ', ', & ------------------------------------------------^ Driver_computeDt.F90(807): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 806 format (1X, I7, 1x, ES10.4, 1x, F8.3, 1x, ES10.4, 2x, '(', ES9.3, ', ', & -----------------------------------------------------------------^ Driver_computeDt.F90(808): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. ES 9.3, ', ', ES9.3, ')', ' | ', A) ---------------^ Driver_computeDt.F90(808): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. ES 9.3, ', ', ES9.3, ')', ' | ', A) ----------------------------^ Driver_computeDt.F90(805): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 805 format (1X, I7, 1x, ES10.4, 1x, ES10.4, 2x, '(', 1P,G10.3, ', ', & --------------------------^ Driver_computeDt.F90(805): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 805 format (1X, I7, 1x, ES10.4, 1x, ES10.4, 2x, '(', 1P,G10.3, ', ', & --------------------------------------^ Driver_computeDt.F90(799): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 802 format (1X, I7, 1x, ES10.4, 1x, F8.3, 1x, ES10.4, 2x, '(', ES9.3, ', ', & --------------------------^ Driver_computeDt.F90(799): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 802 format (1X, I7, 1x, ES10.4, 1x, F8.3, 1x, ES10.4, 2x, '(', ES9.3, ', ', & ------------------------------------------------^ Driver_computeDt.F90(799): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 802 format (1X, I7, 1x, ES10.4, 1x, F8.3, 1x, ES10.4, 2x, '(', ES9.3, ', ', & -----------------------------------------------------------------^ Driver_computeDt.F90(800): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. ES 9.3, ', ', ES9.3, ')', ' | ', 11(:, 1X, ES9.3)) ---------------^ Driver_computeDt.F90(800): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. ES 9.3, ', ', ES9.3, ')', ' | ', 11(:, 1X, ES9.3)) ----------------------------^ Driver_computeDt.F90(800): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. ES 9.3, ', ', ES9.3, ')', ' | ', 11(:, 1X, ES9.3)) ---------------------------------------------------------^ Driver_computeDt.F90(797): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 801 format (1X, I7, 1x, ES10.4, 1x, ES10.4, 2x, '(', 1P,G10.3, ', ', & --------------------------^ Driver_computeDt.F90(797): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. 801 format (1X, I7, 1x, ES10.4, 1x, ES10.4, 2x, '(', 1P,G10.3, ', ', & --------------------------------------^ Driver_computeDt.F90(798): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'. G 10.3, ', ', G10.3, ')', ' | ', 11(:, 1X, ES9.3)) ---------------------------------------------------------^ mpif90 -ggdb -c -O2 -fdefault-real-8 -fdefault-double-8 -Wuninitialized -DMAXBLOCKS=1000 -DNXB=8 -DNYB=8 -DNZB=1 -DN_DIM=2 local_tree_build.F90 mpif90 -ggdb -c -O2 -fdefault-real-8 -fdefault-double-8 -Wuninitialized -DMAXBLOCKS=1000 -DNXB=8 -DNYB=8 -DNZB=1 -DN_DIM=2 tree_search_for_surrblks.F90 ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-real-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10006: ignoring unknown option '-fdefault-double-8' ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type Linking in Units and Libraries mpif90 -ggdb -o flash4 Burn.o Burn_computeAbarZbar.o Burn_computeDt.o Burn_finalize.o Burn_guardCellMaskHook.o Burn_init.o Burn_interface.o Burn_nseAtDens.o Burn_nseAtPres.o Conductivity.o Conductivity_aniso.o Conductivity_finalize.o Conductivity_init.o Conductivity_interface.o Cool.o Cool_computeDt.o Cool_finalize.o Cool_init.o Cool_interface.o Cool_unitTest.o Cosmology_cdmPowerSpectrum.o Cosmology_computeDt.o Cosmology_finalize.o Cosmology_getOldRedshift.o Cosmology_getParams.o Cosmology_getRedshift.o Cosmology_init.o Cosmology_interface.o Cosmology_massToLength.o Cosmology_redshiftHydro.o Cosmology_redshiftToTime.o Cosmology_sendOutputData.o Cosmology_solveFriedmannEqn.o Debugger_init.o Debugger_interface.o Deleptonize.o Deleptonize_finalize.o Deleptonize_getBounce.o Deleptonize_init.o Deleptonize_interface.o Diffuse.o Diffuse_advance1D.o Diffuse_computeDt.o Diffuse_computeFluxLimiter.o Diffuse_finalize.o Diffuse_fluxLimiter.o Diffuse_init.o Diffuse_interface.o Diffuse_setContextInfo.o Diffuse_solveCoupledScalar.o Diffuse_solveScalar.o Diffuse_species.o Diffuse_therm.o Diffuse_visc.o Driver_abortFlash.o Driver_abortFlashC.o Driver_checkMPIErrorCode.o Driver_computeCellLocations.o Driver_computeDt.o Driver_data.o Driver_diagnostics.o Driver_driftBlock.o Driver_driftSetSrcLoc.o Driver_driftUnk.o Driver_evolveFlash.o Driver_finalizeFlash.o Driver_finalizeSourceTerms.o Driver_getComm.o Driver_getDt.o Driver_getElapsedWCTime.o Driver_getMype.o Driver_getNStep.o Driver_getNumProcs.o Driver_getSimTime.o Driver_getTimeStamp.o Driver_init.o Driver_initFlash.o Driver_initMaterialProperties.o Driver_initNumericalTools.o Driver_initParallel.o Driver_initSourceTerms.o Driver_interface.o Driver_logMemoryUsage.o Driver_mpiThreadSupport.o Driver_putTimeStamp.o Driver_sendOutputData.o Driver_setupParallelEnv.o Driver_sourceTerms.o Driver_superTimeStep.o Driver_verifyInitDt.o EnergyDeposition.o EnergyDeposition_finalize.o EnergyDeposition_init.o EnergyDeposition_interface.o Eos.o Eos_data.o Eos_finalize.o Eos_getAbarZbar.o Eos_getData.o Eos_getParameters.o Eos_getTempData.o Eos_guardCells.o Eos_init.o Eos_interface.o Eos_logDiagnostics.o Eos_nucDetectBounce.o Eos_nucInterface.o Eos_nucOneZone.o Eos_putData.o Eos_wrapped.o Flame_computeAbarZbar.o Flame_finalize.o Flame_getProfile.o Flame_getWidth.o Flame_init.o Flame_interface.o Flame_laminarSpeed.o Flame_rhJump.o Flame_rhJumpReactive.o Flame_step.o Flash.o Gravity_accelAtCoords.o Gravity_accelListOfBlocks.o Gravity_accelOneBlock.o Gravity_accelOneRow.o Gravity_bhAccBotNode.o Gravity_bhAccNode.o Gravity_bhBTInit.o Gravity_bhCheckAccuracy.o Gravity_bhEwaldAcc.o Gravity_bhEwaldAccV42.o Gravity_bhEwaldPot.o Gravity_bhEwaldPotV42.o Gravity_bhFillBotNode.o Gravity_bhFinalizeBlock.o Gravity_bhFinalizeIter.o Gravity_bhGetNodeStruct.o Gravity_bhInitFieldVar.o Gravity_bhMAC.o Gravity_bhNodeContrib.o Gravity_bhNormalizeNode.o Gravity_bhPartErr.o Gravity_bhPostprocNode.o Gravity_bhSelfContrib.o Gravity_bhStartBlock.o Gravity_bhTreeWalkEnd.o Gravity_computeDt.o Gravity_finalize.o Gravity_init.o Gravity_interface.o Gravity_potentialListOfBlocks.o Grid_GCPutScratch.o Grid_GCTransferOneBlk.o Grid_addToVar.o Grid_advanceAnisoDiffusion.o Grid_advanceDiffusion.o Grid_advanceDiffusionFcB.o Grid_advanceMultiDiffusion.o Grid_ascGetBlkPtr.o Grid_ascModule.o Grid_ascReleaseBlkPtr.o Grid_bcApplyToRegion.o Grid_bcApplyToRegionMixedGds.o Grid_bcApplyToRegionSpecialized.o Grid_computeUserVars.o Grid_computeVarDiff.o Grid_computeVarMean.o Grid_computeVarNorm.o Grid_conserveField.o Grid_conserveFluxes.o Grid_conserveToPrimitive.o Grid_coordTransfm.o Grid_data.o Grid_dfsvAddToSystem.o Grid_dfsvBeginSystem.o Grid_dfsvCompleteSystem.o Grid_dfsvCreateSystem.o Grid_dump.o Grid_fillGuardCells.o Grid_finalize.o Grid_formatNonRep.o Grid_genGetBlkPtr.o Grid_genReleaseBlkPtr.o Grid_getBlkBC.o Grid_getBlkBoundBox.o Grid_getBlkCenterCoords.o Grid_getBlkCornerID.o Grid_getBlkData.o Grid_getBlkIDFromPos.o Grid_getBlkIDFromPosForListsOfBlocks.o Grid_getBlkIndexLimits.o Grid_getBlkNeighBlkIDFromPos.o Grid_getBlkNeighLevels.o Grid_getBlkPhysicalSize.o Grid_getBlkPtr.o Grid_getBlkRefineLevel.o Grid_getBlkType.o Grid_getBoundboxCentroids.o Grid_getCellCoords.o Grid_getDeltas.o Grid_getDomainBC.o Grid_getDomainBoundBox.o Grid_getFluxData.o Grid_getGeometry.o Grid_getGlobalIndexLimits.o Grid_getListOfBlocks.o Grid_getLocalBlkIDFromPos.o Grid_getLocalNumBlks.o Grid_getMaxCommonRefinement.o Grid_getMaxRefinement.o Grid_getMinCellSize.o Grid_getMinCellSizes.o Grid_getNeighProcList.o Grid_getNumVars.o Grid_getPlaneData.o Grid_getPointData.o Grid_getRowData.o Grid_getSingleCellCoords.o Grid_getSingleCellVol.o Grid_getVarNonRep.o Grid_guardCellMaskHook.o Grid_init.o Grid_initDomain.o Grid_interface.o Grid_limitAbundance.o Grid_mapMeshToParticles.o Grid_mapParticlesToMesh.o Grid_markBlkDerefine.o Grid_markBlkRefine.o Grid_markRefineDerefine.o Grid_markRefineSpecialized.o Grid_moveParticles.o Grid_notifySolnDataUpdate.o Grid_outsideBoundBox.o Grid_parseNonRep.o Grid_pfft.o Grid_pfftFinalize.o Grid_pfftGetIndexLimits.o Grid_pfftInit.o Grid_pfftMapFromOutput.o Grid_pfftMapToInput.o Grid_primitiveToConserve.o Grid_putBlkData.o Grid_putFluxData.o Grid_putLocalNumBlks.o Grid_putPlaneData.o Grid_putPointData.o Grid_putRowData.o Grid_receiveInputData.o Grid_releaseBlkPtr.o Grid_renormAbundance.o Grid_renormMassScalars.o Grid_restrictAllLevels.o Grid_restrictByLevels.o Grid_sbBroadcastParticles.o Grid_sbSelectMaster.o Grid_sendOutputData.o Grid_setFluxHandling.o Grid_setInterpValsGcell.o Grid_setSolverDbgContextInfo.o Grid_smoothVar.o Grid_solidBodyUnitTest.o Grid_solvePoisson.o Grid_sortParticles.o Grid_subcellGeometry.o Grid_unitTest.o Grid_updateRefinement.o Grid_updateSolidBodyForces.o Heat.o Heat_computeDt.o Heat_finalize.o Heat_init.o Heat_interface.o Heatexchange.o Heatexchange_computeDt.o Heatexchange_finalize.o Heatexchange_init.o Heatexchange_interface.o Hydro.o Hydro_computeDt.o Hydro_consolidateCFL.o Hydro_data.o Hydro_detectShock.o Hydro_finalize.o Hydro_gravPotIsAlreadyUpdated.o Hydro_init.o Hydro_interface.o Hydro_mapBcType.o Hydro_recalibrateEints.o Hydro_sendOutputData.o IO_checkForPlot.o IO_data.o IO_endProtonWrite.o IO_endRayWrite.o IO_finalize.o IO_getPrevScalar.o IO_getScalar.o IO_init.o IO_initRPsFromCheckpoint.o IO_interface.o IO_output.o IO_outputFinal.o IO_outputInitial.o IO_readCheckpoint.o IO_readParticles.o IO_readUserArray.o IO_sendOutputData.o IO_setScalar.o IO_startProtonWrite.o IO_startRayWrite.o IO_updateScalars.o IO_writeCheckpoint.o IO_writeIntegralQuantities.o IO_writeParticles.o IO_writePlotfile.o IO_writeProtons.o IO_writeRays.o IO_writeSingleCells.o IO_writeUserArray.o ImBound.o ImBound_finalize.o ImBound_init.o ImBound_interface.o ImBound_setData.o IncompNS.o IncompNS_computeDt.o IncompNS_finalize.o IncompNS_init.o IncompNS_interface.o IncompNS_sendOutputData.o IncompNS_stats.o IncompNS_statsIOExport.o IncompNS_velomg2center.o Interpolate_cubic1DF.o Interpolate_cubic1DFd1.o Interpolate_cubic1DFd1d2.o Interpolate_cubic1Dcoeffs.o Interpolate_cubic1DmonoDerv.o Interpolate_cubic2DF.o Interpolate_cubic2DFd1.o Interpolate_cubic2DFd1d2.o Interpolate_cubic2Dcoeffs.o Interpolate_cubic2DmonoDerv.o Interpolate_cubic3DF.o Interpolate_cubic3DFd1.o Interpolate_cubic3DFd1d2.o Interpolate_cubic3Dcoeffs.o Interpolate_cubic3DmonoDerv.o Interpolate_finalize.o Interpolate_init.o Interpolate_interface.o Ionize.o Ionize_equil.o Ionize_finalize.o Ionize_init.o Ionize_interface.o Logfile_break.o Logfile_close.o Logfile_create.o Logfile_data.o Logfile_finalize.o Logfile_getDateTimeStr.o Logfile_init.o Logfile_interface.o Logfile_open.o Logfile_stamp.o Logfile_stampMessage.o Logfile_stampVarMask.o Logfile_writeSummary.o MagneticResistivity.o MagneticResistivity_finalize.o MagneticResistivity_fullState.o MagneticResistivity_init.o MagneticResistivity_interface.o MassDiffusivity.o MassDiffusivity_finalize.o MassDiffusivity_init.o MassDiffusivity_interface.o Multispecies_finalize.o Multispecies_getAvg.o Multispecies_getProperty.o Multispecies_getPropertyVector.o Multispecies_getSum.o Multispecies_getSumFrac.o Multispecies_getSumInv.o Multispecies_getSumSqr.o Multispecies_init.o Multispecies_interface.o Multispecies_list.o Multispecies_setProperty.o Multispecies_unitTest.o NSE_finalAtDens.o NSE_finalAtPres.o NSE_finalize.o NSE_init.o NSE_interface.o Opacity.o Opacity_finalize.o Opacity_init.o Opacity_interface.o Opacity_unitTest.o Paramesh_finalize.o Paramesh_init.o Particles_accumCount.o Particles_addNew.o Particles_advance.o Particles_clean.o Particles_computeDt.o Particles_dump.o Particles_finalize.o Particles_getCountPerBlk.o Particles_getGlobalNum.o Particles_getLocalNum.o Particles_init.o Particles_initData.o Particles_initForces.o Particles_initPositions.o Particles_interface.o Particles_longRangeForce.o Particles_manageLost.o Particles_mapFromMesh.o Particles_mapToMeshOneBlk.o Particles_putLocalNum.o Particles_sendOutputData.o Particles_shortRangeForce.o Particles_sinkAccelGasOnSinksAndSinksOnGas.o Particles_sinkAdvanceParticles.o Particles_sinkComputeDt.o Particles_sinkCreateAccrete.o Particles_sinkInit.o Particles_sinkMarkRefineDerefine.o Particles_sinkMoveParticles.o Particles_sinkSortParticles.o Particles_sinkSyncWithParticles.o Particles_unitTest.o Particles_updateAttributes.o Particles_updateGridVar.o Particles_updateRefinement.o PhysicalConstants_data.o PhysicalConstants_get.o PhysicalConstants_init.o PhysicalConstants_interface.o PhysicalConstants_list.o PhysicalConstants_listUnits.o Pipeline_finalize.o Pipeline_globalCheckStatus.o Pipeline_globalCheckStructure.o Pipeline_init.o Pipeline_interface.o Pipeline_localActivate.o Pipeline_localCreate.o Pipeline_localDeactivate.o Pipeline_localDestroy.o Pipeline_localFlush.o Pipeline_localGetItems.o Pipeline_localPrintSnapshot.o Pipeline_localProgress.o Pipeline_localSendItem.o PlasmaState_finalize.o PlasmaState_getComposition.o PlasmaState_init.o PlasmaState_interface.o Polytrope.o Polytrope_finalize.o Polytrope_init.o Polytrope_interface.o PrimordialChemistry.o PrimordialChemistry_computeDt.o PrimordialChemistry_finalize.o PrimordialChemistry_init.o PrimordialChemistry_interface.o Profiler_getSummary.o Profiler_init.o Profiler_interface.o Profiler_start.o Profiler_stop.o ProtonEmission.o ProtonEmission_finalize.o ProtonEmission_init.o ProtonEmission_interface.o ProtonImaging.o ProtonImaging_finalize.o ProtonImaging_init.o ProtonImaging_interface.o RadTrans.o RadTrans_computeDt.o RadTrans_computeFluxLimiter.o RadTrans_finalize.o RadTrans_getDbgContext.o RadTrans_init.o RadTrans_interface.o RadTrans_mgdEFromT.o RadTrans_mgdGetBound.o RadTrans_mgdSetBc.o RadTrans_mgdSetBound.o RadTrans_mgdSetEnergy.o RadTrans_planckInt.o RadTrans_sumEnergy.o RayTrace.o RayTrace_finalize.o RayTrace_init.o RayTrace_interface.o Roots_finalize.o Roots_init.o Roots_interface.o Roots_x2Polynomial.o Roots_x3Polynomial.o Roots_x4Polynomial.o RungeKutta_finalize.o RungeKutta_init.o RungeKutta_interface.o RungeKutta_step.o RungeKutta_stepConfined.o RungeKutta_stepSizeEstimate.o RuntimeParameters_add.o RuntimeParameters_bcast.o RuntimeParameters_data.o RuntimeParameters_finalize.o RuntimeParameters_get.o RuntimeParameters_getAll.o RuntimeParameters_getNum.o RuntimeParameters_getNumIgn.o RuntimeParameters_getPrev.o RuntimeParameters_init.o RuntimeParameters_interface.o RuntimeParameters_mapStrToInt.o RuntimeParameters_read.o RuntimeParameters_set.o RuntimeParameters_setPrev.o RuntimeParameters_stampIgnored.o Simulation_adjustEvolution.o Simulation_computeAnalytical.o Simulation_customizeProlong.o Simulation_data.o Simulation_defineDomain.o Simulation_finalize.o Simulation_freeUserArrays.o Simulation_getRenormGroup.o Simulation_getVarnameType.o Simulation_guardCellMaskHook.o Simulation_init.o Simulation_initBlock.o Simulation_initRestart.o Simulation_initSpecies.o Simulation_interface.o Simulation_mapIntToStr.o Simulation_mapParticlesVar.o Simulation_mapStrToInt.o Simulation_sendOutputData.o SolidMechanics.o SolidMechanics_computeDt.o SolidMechanics_finalize.o SolidMechanics_init.o SolidMechanics_interface.o Stir.o Stir_computeDt.o Stir_finalize.o Stir_init.o Stir_interface.o ThomsonScattering.o ThomsonScattering_finalize.o ThomsonScattering_init.o ThomsonScattering_interface.o Timers_data.o Timers_finalize.o Timers_getSummary.o Timers_init.o Timers_interface.o Timers_reset.o Timers_start.o Timers_stop.o TreeRay_bhAccBotNode.o TreeRay_bhAccNode.o TreeRay_bhBTInit.o TreeRay_bhCheckAccuracy.o TreeRay_bhFillBotNode.o TreeRay_bhFinalizeBlock.o TreeRay_bhFinalizeIter.o TreeRay_bhGetNodeStruct.o TreeRay_bhInitFieldVar.o TreeRay_bhMAC.o TreeRay_bhNodeContrib.o TreeRay_bhNormalizeNode.o TreeRay_bhPartErr.o TreeRay_bhPostprocNode.o TreeRay_bhSelfContrib.o TreeRay_bhStartBlock.o TreeRay_bhTreeWalkEnd.o TreeRay_finalize.o TreeRay_init.o TreeRay_interface.o TreeRay_potentialListOfBlocks.o Turb_calc.o Turb_finalize.o Turb_init.o Turb_interface.o Viscosity.o Viscosity_finalize.o Viscosity_init.o Viscosity_interface.o XrayImaging.o XrayImaging_finalize.o XrayImaging_init.o XrayImaging_interface.o amr_1blk_bcset.o amr_1blk_cc_cp_remote.o amr_1blk_cc_prol_gen_unk_fun.o amr_1blk_cc_prol_gen_work_fun.o amr_1blk_cc_prol_genorder.o amr_1blk_cc_prol_inject.o amr_1blk_cc_prol_linear.o amr_1blk_cc_prol_user.o amr_1blk_cc_prol_work_genorder.o amr_1blk_cc_prol_work_inject.o amr_1blk_cc_prol_work_linear.o amr_1blk_cc_prol_work_mg.o amr_1blk_cc_prol_work_user.o amr_1blk_copy_soln.o amr_1blk_ec_cp_remote.o amr_1blk_ec_prol_gen_fun.o amr_1blk_ec_prol_genorder.o amr_1blk_ec_prol_linear.o amr_1blk_ec_prol_user.o amr_1blk_fc_clean_divb.o amr_1blk_fc_cp_remote.o amr_1blk_fc_prol_dbz.o amr_1blk_fc_prol_divpres.o amr_1blk_fc_prol_gen_fun.o amr_1blk_fc_prol_genorder.o amr_1blk_fc_prol_inject.o amr_1blk_fc_prol_linear.o amr_1blk_fc_prol_user.o amr_1blk_guardcell_reset.o amr_1blk_guardcell_srl.o amr_1blk_nc_cp_remote.o amr_1blk_nc_prol_gen_fun.o amr_1blk_nc_prol_genorder.o amr_1blk_nc_prol_linear.o amr_1blk_nc_prol_user.o amr_1blk_save_soln.o amr_1blk_t_to_perm.o amr_1blk_to_perm.o amr_bcset_init.o amr_block_geometry.o amr_check_refine.o amr_close.o amr_compute_morton.o amr_get_new_nodetypes.o amr_initialize.o amr_mg_common.o amr_mg_init.o amr_mg_morton_process.o amr_mg_prolong.o amr_mg_restrict.o amr_migrate_tree_data.o amr_morton_order.o amr_morton_process.o amr_mpi_find_blk_in_buffer.o amr_perm_to_1blk.o amr_prolong_cc_fun_init.o amr_prolong_face_fun_init.o amr_prolong_fun_init.o amr_prolong_gen_unk1_fun.o amr_prolong_gen_work1_fun.o amr_q_sort.o amr_q_sort_real.o amr_reorder_grid.o amr_restrict_ec_fun.o amr_restrict_ec_genorder.o amr_restrict_ec_user.o amr_restrict_edge.o amr_restrict_fc_fun.o amr_restrict_fc_genorder.o amr_restrict_fc_ins.o amr_restrict_fc_user.o amr_restrict_nc_fun.o amr_restrict_nc_genorder.o amr_restrict_nc_user.o amr_restrict_red.o amr_restrict_unk_fun.o amr_restrict_unk_genorder.o amr_restrict_unk_user.o amr_restrict_work_fun.o amr_restrict_work_fun_recip.o amr_restrict_work_genorder.o amr_restrict_work_user.o amr_set_runtime_parameters.o amr_sort_by_work.o amr_sort_morton.o amr_sort_morton_reorder_grid.o amr_system_calls.o clean_field.o compress_fetch_list.o concatStringWithInt.o constants.o current_date_time.o dr_computePosDefDt.o dr_interface.o dr_set_rlimits.o dr_shortenLastDt.o dr_sleep.o dr_wallClockLimitExceeded.o eos_fillMapLookup.o eos_helmholtz.o eos_idealGamma.o eos_idealGamma3T.o eos_idealGammaData.o eos_initGamma.o eos_initHelmholtz.o eos_initMgamma.o eos_initMtemp.o eos_initNuclear.o eos_initTabulated.o eos_localInterface.o eos_mgamma.o eos_mtemp.o eos_nuclear.o eos_tabFinalize.o eos_tabIonmix.o eos_tabulated.o eos_variableMap.o fill_old_loc.o findWords.o find_surrblks.o flash_convert_cc_hook.o flash_unconvert_cc_hook.o gr_GCAllocScratch.o gr_GCReleaseScratch.o gr_GCScratchData.o gr_GCTransferOneBlk.o gr_amr_dump_runtime_parameters.o gr_bcApplyToAllBlks.o gr_bcApplyToOneFace.o gr_bcApplyToOneFaceAllGds.o gr_bcData.o gr_bcFinalize.o gr_bcGetRegion.o gr_bcHseInit.o gr_bcInit.o gr_bcInterface.o gr_bcMapBcType.o gr_bcPutRegion.o gr_bhFinalize.o gr_bhInit.o gr_bhInterface.o gr_bicgFinalize.o gr_bicgInit.o gr_bicgInterface.o gr_bicgMapBcType.o gr_checkDataType.o gr_checkGridConsistency.o gr_checkGridState.o gr_commSetUp.o gr_conserveToPrimitive.o gr_createBlock.o gr_createDomain.o gr_enforceMaxRefine.o gr_ensureValidNeighborInfo.o gr_expandDomain.o gr_extendedGetCellCoords.o gr_extendedGetDeltas.o gr_findAllNeghID.o gr_findBlock.o gr_findMean.o gr_findNeghID.o gr_findWhichChild.o gr_findWhichChildren.o gr_flashHook_interfaces.o gr_forceDerefInRadius.o gr_freeCommRecvBuffer.o gr_getBlkHandle.o gr_getCellFaceArea.o gr_getCellVol.o gr_getDataOffsets.o gr_getInteriorBlkPtr.o gr_hgFinalize.o gr_hgInit.o gr_hgInterface.o gr_hgMapBcType.o gr_hgPfftFinalize.o gr_hgPfftInit.o gr_hg_amr_1blk_bcset_work.o gr_hypreAddGraph.o gr_hypreApplyBcToFace.o gr_hypreApplyBcToFaceAnisoCond.o gr_hypreComputeB.o gr_hypreCreateMatrix.o gr_hypreCreateMatrix1Blk.o gr_hypreCreateMatrixAnisoCond.o gr_hypreCreateMatrixFcB.o gr_hypreCreateMatrixFcBAnisoCond.o gr_hypreDestroyGrid.o gr_hypreDestroySolver.o gr_hypreExchangeFacB.o gr_hypreExchangeFacBFcB.o gr_hypreFinalize.o gr_hypreGetFaceB.o gr_hypreGetFaceBFcB.o gr_hypreGridStatus.o gr_hypreInit.o gr_hypreSetIniGuess.o gr_hypreSetupGrid.o gr_hypreSetupSolver.o gr_hypreSolve.o gr_hypreUpdateSoln.o gr_initGeometry.o gr_initParameshArrays.o gr_initParameshDomainBboxes.o gr_interface.o gr_interfaceTypeDecl.o gr_isoInterface.o gr_isoMpoleFinalize.o gr_isoMpoleInit.o gr_makeMaskConsistent.o gr_markDerefineByLogRadius.o gr_markDerefineByTime.o gr_markEllipsoid.o gr_markInRadius.o gr_markInRectangle.o gr_markRefineDerefine.o gr_markVarThreshold.o gr_markWithRadius.o gr_mgFinalize.o gr_mgInit.o gr_mgInterface.o gr_mgMapBcType.o gr_mgPfftFinalize.o gr_mgPfftInit.o gr_mpoleAllocateRadialArrays.o gr_mpoleCen1Dspherical.o gr_mpoleCen2Dcylindrical.o gr_mpoleCen2Dspherical.o gr_mpoleCen3Dcartesian.o gr_mpoleCen3Dcylindrical.o gr_mpoleCenterOfExpansion.o gr_mpoleCollectMoments.o gr_mpoleDeallocateRadialArrays.o gr_mpoleDumpMoments.o gr_mpoleFinalize.o gr_mpoleHeapsort.o gr_mpoleInit.o gr_mpoleMom1Dspherical.o gr_mpoleMom2Dcylindrical.o gr_mpoleMom2Dspherical.o gr_mpoleMom3Dcartesian.o gr_mpoleMom3Dcylindrical.o gr_mpoleMomBins1Dspherical.o gr_mpoleMomBins2Dcylindrical.o gr_mpoleMomBins2Dspherical.o gr_mpoleMomBins3Dcartesian.o gr_mpoleMomBins3Dcylindrical.o gr_mpoleMoments.o gr_mpolePot1Dspherical.o gr_mpolePot2Dcylindrical.o gr_mpolePot2Dspherical.o gr_mpolePot3Dcartesian.o gr_mpolePot3Dcylindrical.o gr_mpolePotentials.o gr_mpolePrintRadialInfo.o gr_mpoleRad1Dspherical.o gr_mpoleRad2Dcylindrical.o gr_mpoleRad2Dspherical.o gr_mpoleRad3Dcartesian.o gr_mpoleRad3Dcylindrical.o gr_mpoleRadialSampling.o gr_mpoleSetInnerZoneGrid.o gr_mpoleSetOuterZoneGrid.o gr_mpoleSetRadialBinData.o gr_packBCs.o gr_pfftFinalize.o gr_pfftInit.o gr_pfftInterface.o gr_pfftInterfaceTypeDecl.o gr_pfftPoissonDirect.o gr_pmFlashHookData.o gr_primitiveToConserve.o gr_ptFillBlkParticleInfo.o gr_ptFinalize.o gr_ptInit.o gr_ptInterface.o gr_ptMapInit.o gr_ptMarkRefineDerefine.o gr_ptMove.o gr_ptMoveOffBlk.o gr_recreateDomain.o gr_releaseInteriorBlkPtr.o gr_restrictTree.o gr_sanitizeDataAfterInterp.o gr_sbCreateParticles.o gr_sbFinalize.o gr_sbGetProcBlock.o gr_sbInit.o gr_sbInterface.o gr_sbSendBoundBox.o gr_sbSendForces.o gr_sbSendParticleCount.o gr_sbSendParticles.o gr_sbSendPosn.o gr_sbStoreParticlesPerProc.o gr_sbUpdateForces.o gr_setBlockType.o gr_setDataStructInfo.o gr_setGcFillNLayers.o gr_setMasks.o gr_setMaxRefineByTime.o gr_solversFinalize.o gr_solversInit.o gr_solversTestInit.o gr_unmarkRefineByLogRadius.o gr_updateData.o gr_updateRefinement.o gr_xyzToBlock.o gr_xyzToBlockLevel.o hy_8wv_addHallFluxes.o hy_8wv_addResistiveFluxes.o hy_8wv_addThermalFluxes.o hy_8wv_addViscousFluxes.o hy_8wv_divb.o hy_8wv_fluxes.o hy_8wv_interface.o hy_8wv_interpolate.o hy_8wv_setTimestep.o hy_8wv_sources.o hy_8wv_sweep.o hy_memGetBlkPtr.o hy_memInterface.o hy_memReleaseBlkPtr.o hy_memScratchData.o io.o io_attribute.o io_bcastScalars.o io_c_interface.o io_checkBlockShape.o io_closeFile.o io_comp_decomp.o io_createDatasets.o io_create_dataset.o io_finalizeListsRead.o io_finalizeListsWrite.o io_getAllScalars.o io_getNumScalars.o io_getOutputName.o io_getVarExtrema.o io_h5_attribute.o io_h5_read_present_dims.o io_h5_report_xfer_method.o io_h5_type.o io_h5_type_matched_xfer.o io_h5_xfer.o io_h5_xfer_wrapper.o io_h5create_dataset.o io_h5create_dataset_protons.o io_h5create_raydset.o io_h5file_interface.o io_h5read_generic_int_arr.o io_h5read_generic_real_arr.o io_h5read_header.o io_h5read_lists.o io_h5read_unknowns.o io_h5write_generic_int_arr.o io_h5write_generic_real_arr.o io_h5write_header.o io_h5write_lists.o io_h5write_protondata.o io_h5write_raydata.o io_h5write_unknowns.o io_h5write_unknowns_sp.o io_initFile.o io_intfTypesModule.o io_isPlotVar.o io_memoryReport.o io_mpi_type.o io_prepareListsRead.o io_prepareListsWrite.o io_prepareSimInfo.o io_ptCorrectNextPartTime.o io_ptInit.o io_ptInterface.o io_ptResetNextFile.o io_ptSendOutputData.o io_readData.o io_readRPsFromCheckpoint.o io_repack_data.o io_rescaleCellBoxes.o io_restrictBeforeWrite.o io_setPrevScalar.o io_typeInterface.o io_writeData.o io_wsInit.o io_xfer_cont_slab.o io_xfer_tree_data.o local_tree.o local_tree_build.o log_allocateStrArr.o log_getUnitsArr.o makeLowercase.o morton_sort.o mpi_amr_1blk_guardcell.o mpi_amr_1blk_guardcell_c_to_f.o mpi_amr_1blk_restrict.o mpi_amr_boundary_block_info.o mpi_amr_check_derefine.o mpi_amr_checkpoint_re.o mpi_amr_checkpoint_re_default.o mpi_amr_checkpoint_re_hdf5.o mpi_amr_checkpoint_re_mpiio.o mpi_amr_checkpoint_wr.o mpi_amr_checkpoint_wr_default.o mpi_amr_checkpoint_wr_hdf5.o mpi_amr_checkpoint_wr_mpiio.o mpi_amr_comm_setup.o mpi_amr_derefine_blocks.o mpi_amr_edge_average.o mpi_amr_edge_average_udt.o mpi_amr_edge_average_vdt.o mpi_amr_edge_diagonal_check.o mpi_amr_exchange_nodetype.o mpi_amr_flux_conserve.o mpi_amr_flux_conserve_udt.o mpi_amr_flux_conserve_vdt.o mpi_amr_get_remote_block.o mpi_amr_get_remote_block_fvar.o mpi_amr_global_domain_limits.o mpi_amr_guardcell.o mpi_amr_local_surr_blks_lkup.o mpi_amr_plotfile_chombo.o mpi_amr_prolong.o mpi_amr_prolong_fc_divbconsist.o mpi_amr_redist_blk.o mpi_amr_refine_blocks.o mpi_amr_refine_derefine.o mpi_amr_restrict.o mpi_amr_restrict_bnd_data.o mpi_amr_restrict_bnd_data_vdt.o mpi_amr_restrict_edge_data.o mpi_amr_restrict_edge_data_vdt.o mpi_amr_restrict_fulltree.o mpi_amr_singular_line.o mpi_amr_store_comm_info.o mpi_amr_store_comm_info_mg.o mpi_get_buffer.o mpi_get_edge_buffer.o mpi_get_flux_buffer.o mpi_lib.o mpi_morton.o mpi_morton_bnd.o mpi_morton_bnd_fluxcon.o mpi_morton_bnd_prolong.o mpi_morton_bnd_restrict.o mpi_pack_blocks.o mpi_pack_edges.o mpi_pack_fluxes.o mpi_pack_tree_info.o mpi_put_buffer.o mpi_put_edge_buffer.o mpi_put_edge_buffer_1blk.o mpi_put_flux_buffer.o mpi_set_message_limits.o mpi_set_message_limits_unpack.o mpi_set_message_sizes.o mpi_unpack_blocks.o mpi_unpack_edges.o mpi_unpack_fluxes.o mpi_unpack_tree_info.o mpi_wrapper_dble.o mpi_wrapper_int.o mpi_wrapper_logical.o mpi_wrapper_real.o nameSyntaxError.o nameValueLL_bcast.o nameValueLL_data.o nameValueLL_get.o nameValueLL_getAll.o nameValueLL_getNum.o nameValueLL_logRules.o nameValueLL_rules.o nameValueLL_set.o paramesh_comm_data.o paramesh_dimensions.o paramesh_interfaces.o paramesh_mpi_interfaces.o pc_interface.o pc_utilities.o physicaldata.o poisson_sor.o process_fetch_list.o prolong_arrays.o rationalize_fetch_list.o removeNullChar.o rp_getArgument.o rp_getOpt.o rp_initParameters.o rp_rules.o rp_storeIgnoredParams.o send_block_data.o setup_buildstamp.o setup_buildstats.o setup_flashRelease.o setup_getFlashUnits.o timings.o tmr_buildSummary.o tmr_create.o tmr_etime.o tmr_findTimerIndex.o tmr_getMaxCallStackDepth.o tmr_getMaxTimerParents.o tmr_init.o tmr_lookupIndex.o tmr_stackLib.o tree.o tree_search_for_surrblks.o umap.o user_coord_transfm.o ut_constRealZeroFn1.o ut_conversionInterface.o ut_convertToArrayIndicies.o ut_convertToMemoryOffset.o ut_fndpos.o ut_generalInterface.o ut_getFreeFileUnit.o ut_hunt.o ut_interpolationInterface.o ut_polint.o ut_printMatrix.o ut_qsort.o ut_qsortC.o ut_qsortInterface.o ut_quadraticInterpol.o ut_sortInterface.o ut_sortOnProcs.o ut_sysMemData.o ut_sysMemInterface.o ut_sysMemStats.o ut_sysMemSummaryStats.o ut_sys_mem_usage.o workspace.o -L /cvmfs/ soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/gcc7.3/hdf5/1.10.3/lib -lhdf5 -lz SUCCESS -- PhD University of Alberta Department of Physics -------------- next part -------------- An HTML attachment was scrubbed... URL: