[FLASH-USERS] problem with plugin for VisIt

[Kunal Rao]

I provided the read permissions to the output file. Now, I get the following
message when opening:

--------------------------------------------------------

 VisIt could not read from the file
"/home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_*
database".

The generated error message was:

There was an error opening
/home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_* database.
It may be an invalid file. VisIt tried using the following file format
readers to open the file: Silo

-----------------------------------------------------------

Thanks & Regards,
Kunal

On Mon, Jun 28, 2010 at 1:12 PM, Kunal Rao <kunalgrao at gmail.com> wrote:

> Hi Alex,
>
> Thanks for your reply.
>
> My output files from FLASH3.2 simulations are as follows:
> sedov.dat
> sedov.log
> sedov_hdf5_chk_0000
> sedov_hdf5_chk_0001
> sedov_hdf5_chk_0002
> sedov_hdf5_chk_0003
> sedov_hdf5_chk_0004
> sedov_hdf5_chk_0005
> sedov_hdf5_plt_cnt_0000
> sedov_forced_hdf5_plt_cnt_0000
>
> I have installed visit 2.0.0 and am able to open the visit gui. When I open
> one of the above mentioned output files, I get the following message:
>
> -------------------------------------------------------------------------
>
> VisIt could not read from the file
> "/home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_*
> database".
>
> The generated error message was:
>
> There was an error opening
> /home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_* database.
> It may be an invalid file. VisIt tried using the following file format
> readers to open the file: <No suitable plugins were identified>
>
> The file format reader issued the following error message, which may (or
> may not) be indicative of the problem:
>
> No read permissions for
> /home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_0000.
>
>
> -------------------------------------------------------------------------------------
>
> Can you please tell me how it works without having to manually build any
> plugin?
>
> Thanks & Regards,
> Kunal
>
>
>
> On Mon, Jun 28, 2010 at 12:07 PM, Alexander Wagner <
> alexander.y.wagner at googlemail.com> wrote:
>
>> Hi Kunal,
>>
>> I was always under the impression that the plugins were already shipped in
>> VisIt. At least for me, VisIt works with FLASH3.2 data files without having
>> to manually build the plugins.
>>
>> Best wishes,
>> Alex
>>
>>
>>
>> On 06/29/2010 01:30 AM, Kunal Rao wrote:
>>
>>> Hi
>>>
>>> I am trying to get the VisIt tool working on Ubuntu 9.10 for FLASH. I
>>> have the visit tool installed and am trying to add the 1st plugin (out of 2
>>> as mentioned on http://flash.uchicago.edu/website/codesupport/visit/ )
>>> so as to view the output files produced by FLASH.
>>>
>>> There are 3 steps involved in adding the 1st plugin. I did the first 2
>>> i.e.
>>> xml2info -clobber FLASH.xml
>>> xml2makefile -clobber FLASH.xml
>>>
>>> but the third one i.e. make is giving me an error. This is what I get
>>> when I do the make:
>>>
>>>
>>> -----------------------------------------------------------------------------------------------------------------
>>>
>>> root at kunalgrao-laptop:~/Desktop/installs/FLASH# make
>>> HDF5_INCLUDE=-I/home/kunalgrao/Desktop/installs/hdf5/include
>>> HDF5_LIB=-L/home/kunalgrao/Desktop/installs/hdf5/libs/libhdf5.a |tee
>>> make.log
>>>
>>>
>>> ****************************************************************************
>>> *** Building FLASH Database Plugin
>>>
>>> ****************************************************************************
>>> source='avtFLASHFileFormat.C' object='avtFLASHFileFormat.o' libtool=no
>>>      \
>>>    depfile='./avtFLASHFileFormat.d'
>>>  tmpdepfile='./avtFLASHFileFormat.tmp_d' \
>>>    depmode=gcc3 /usr/local/visit/1.11.2/linux-intel/bin/depcomp
>>>  \
>>>    g++ -D_LARGEFILE64_SOURCE -Wno-deprecated -O2
>>> -I/home/kunalgrao/Desktop/installs/hdf5/include
>>> -I/misc/gapps/mpich/1.2.4/Linux/serial/64/debug/include
>>>  -I/usr/local/visit/1.11.2/linux-intel/include/cognomen
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Common
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Filtering
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Graphics
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Hybrid
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/IO
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Imaging
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Rendering
>>> -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Utilities -I.
>>> -I/home/kunalgrao/Desktop/installs/mpich/include
>>> -I/usr/local/visit/1.11.2/linux-intel/include
>>> -I/usr/local/visit/1.11.2/linux-intel/include/visit
>>> -I/usr/local/visit/1.11.2/linux-intel/include/python -c avtFLASHFileFormat.C
>>> -o avtFLASHFileFormat.o
>>> avtFLASHFileFormat.C: In member function ‘vtkPolyData*
>>> avtFLASHFileFormat::GetMortonCurveSubset(int)’:
>>> avtFLASHFileFormat.C:1058: error: no matching function for call to
>>> ‘find(__gnu_cxx::__normal_iterator<int*, std::vector<int,
>>> std::allocator<int> > >, __gnu_cxx::__normal_iterator<int*, std::vector<int,
>>> std::allocator<int> > >, int&)’
>>> make: *** [avtFLASHFileFormat.o] Error 1
>>>
>>> --------------------------------------------------------------------------------------------------------------
>>>
>>> I am also attaching the Makefile for your reference. Kindly let me know
>>> how to get it right.
>>>
>>> Thanks & Regards,
>>> Kunal
>>>
>>>
>>>
>>> ----------------------------------------------------------------------------------------------------
>>>
>>>
>
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