[FLASH-USERS] The problem with “3-dimension” burn

[Chao Zhang]

Dear all,



I met the problem of Burn Test Problem, Cellular Nuclear Burning. When I run it in 2-dimension, everything is ok. But when I run it in 3-d, the problem comes out. I just want to try the example of “Cellular Nuclear Burning” firstly. I didn’t change anything about it.



Here is my setup step.



[zxd at node2 FLASH3.3]$ ./setup Cellular -3d

Processing Shortcut file: /home/zxd/ZhangChao/FLASH3.3/bin/setup_shortcuts.txt

checking for needed files and directories

    checking sites Aliases file

    using site directory for site node2

scanning /home/zxd/ZhangChao/FLASH3.3/object/Units file for included units

    Driver/DriverMain/Split

    Grid/GridBoundaryConditions

    Grid/GridMain/paramesh/interpolation/Paramesh4/prolong

    Grid/GridMain/paramesh/interpolation/prolong

    Grid/GridMain/paramesh/paramesh4/Paramesh4.0/PM4_package/headers

    Grid/GridMain/paramesh/paramesh4/Paramesh4.0/PM4_package/mpi_source

    Grid/GridMain/paramesh/paramesh4/Paramesh4.0/PM4_package/source

    Grid/GridMain/paramesh/paramesh4/Paramesh4.0/PM4_package/utilities/multigrid

    Grid/localAPI

    IO/IOMain/hdf5/serial/PM

    IO/localAPI

    Multispecies/MultispeciesMain

    PhysicalConstants/PhysicalConstantsMain

    RuntimeParameters/RuntimeParametersMain

    Simulation/SimulationComposition/Burn

    Simulation/SimulationMain/Cellular

    flashUtilities/contiguousConversion

    flashUtilities/general

    flashUtilities/interpolation/oneDim

    flashUtilities/nameValueLL

    monitors/Logfile/LogfileMain

    monitors/Timers/TimersMain/MPINative

    physics/Eos/EosMain/Helmholtz/SpeciesBased

    physics/Hydro/HydroMain/split/PPM/PPMKernel

    physics/sourceTerms/Burn/BurnIntegrate

    physics/sourceTerms/Burn/BurnMain/nuclearBurn/Aprox13

Computing default values for options not specified on command line

generating Makefile

    running /home/zxd/ZhangChao/FLASH3.3/lib/ma28/build.csh

rm -f ../object/libma28.a Ma28.o

/usr/local/mpich/bin/mpif90  -c -r8 -i4 -O3 -real_size 64 -c Ma28.F90

ar -r ../object/libma28.a Ma28.o

ar: creating ../object/libma28.a

Copying data files: 2 copied

SUCCESS





Is it ok???





















The next is the error.



[zxd at node2 object]$ /usr/local/mpich/bin/mpirun -np 3 -machinefile new ./flash3

 RuntimeParameters_read:  ignoring unknown parameter "order"...

 RuntimeParameters_read:  ignoring unknown parameter "slopeLimiter"...

 RuntimeParameters_read:  ignoring unknown parameter "LimitedSlopeBeta"...

 RuntimeParameters_read:  ignoring unknown parameter "RiemannSolver"...

 RuntimeParameters_read:  ignoring unknown parameter "shockInstabilityFix"...

 RuntimeParameters_read:  ignoring unknown parameter "shockDetect"...

 MaterialProperties initialized

 Cosmology initialized

 about to open file

 [Eos_init] Cannot open helm_table.bdat!

 [Eos_init] Trying old helm_table.dat!

 Source terms initialized

 flash:            3  dimensional cellular detonation initialization

  

 helium mass fraction    =   0.000000000000000E+000

 carbon mass fraction    =    1.00000000000000     

 oxygen mass fraction    =   0.000000000000000E+000

  

 upstream density        =    10000000.0000000     

 upstream temperature    =    200000000.000000     

 upstream velocity       =   0.000000000000000E+000

  

 post shock density      =    42360000.0000000     

 post shock temperature  =    4423000000.00000     

 post shock velocity     =    287600000.000000     

  

 post shock distance     =    25.6000000000000     

 x center                =   0.000000000000000E+000

 y center                =   0.000000000000000E+000

 z center                =   0.000000000000000E+000

  

 noise amplitude         =   1.000000000000000E-002

 noise distance          =    5.00000000000000     

  

  iteration, no. not moved =            0           6

  iteration, no. not moved =            1           1

  iteration, no. not moved =            2           0

 refined: total leaf blocks =           20

 refined: total blocks =           20

  starting MORTON ORDERING 

  tot_blocks after           20

  max_blocks 2           7

  min_blocks 2           6

 INFO: Grid_fillGuardCells is ignoring masking.

  iteration, no. not moved =            0          11

  iteration, no. not moved =            1           2

  iteration, no. not moved =            2           0

 refined: total leaf blocks =           34

 refined: total blocks =           36

  iteration, no. not moved =            0          12

  iteration, no. not moved =            1           2

  iteration, no. not moved =            2           0

 refined: total leaf blocks =           90

 refined: total blocks =          100

  iteration, no. not moved =            0          21

  iteration, no. not moved =            1           0

 refined: total leaf blocks =          314

 refined: total blocks =          356

[0] MPI Abort by user Aborting program !

[0] Aborting program!

p0_18354:  p4_error: : 7223616

rm_l_2_18497: (2.701312) net_send: could not write to fd=5, errno = 32

forrtl: error (69): process interrupted (SIGINT)

forrtl: error (69): process interrupted (SIGINT)

p0_18354: (5.171200) net_send: could not write to fd=4, errno = 32









So I don’t know what happen ?



Can anyone tell me how to do it?



Best wishes,

Zhang


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://flash.rochester.edu/pipermail/flash-users/attachments/20110921/3175a077/attachment.htm>