[FLASH-USERS] Parallel I/O on Stampede

[Meghann Agarwal]

Hello,

Has anyone been able to run FLASH4 on Stampede with parallel I/O?

My code successfully compiles after setup with flag +hdf5typeio and 
loading module phdf5.  I restart from a checkpoint file written in 
serial, but it seems that not all grid variables/data from the input 
file are transferred to memory.

Thanks,
Meghann

Some screen output:

  file: rad_hdf5_chk_0028 opened for restart
  [io_h5_read_file_format.c]: File format version is 9.
  [io_h5_xfer_mesh_dataset.c]: Couldn't find variable 'h' in file, so 
skipping it.
  [io_h5_xfer_mesh_dataset.c]: Couldn't find variable 'hd' in file, so 
skipping it.
  [io_h5_xfer_mesh_dataset.c]: Couldn't find variable 'hel' in file, so 
skipping it.
  [io_h5_xfer_mesh_dataset.c]: Couldn't find variable 'hep' in file, so 
skipping it.
  read_data:  read        59241  blocks.
  io_readData:  finished reading input file.
...
WARNING after gc filling: min. 
unk(DENS_VAR)=0.5002375168268448933932E-40     PE=124 
block=1                                type=1
...