[FLASH-USERS] problem building flash (libhdf5)

[Terry Gaetz]

This is with FLASH4.0.1 on a linux machine running CentOS 5.9.

I set up for a Sedov test run:
   ./setup -auto Sedov 2>&1 | tee log.setup_sedov
   pushd object
   make 2>&1 | tee log.make

This ends with "SUCCESS".

When I try to run it, though:

geri% ./flash4
./flash4: error while loading shared libraries: libhdf5.so.8: cannot
open shared object file: No such file or directory

ldd shows:
geri% ldd flash4
         linux-vdso.so.1 =>  (0x00007fff24fac000)
         libhdf5.so.8 => not found
         libz.so.1 => /lib64/libz.so.1 (0x00000034ae800000)
         libmpi_f90.so.1 => not found
         libmpi_f77.so.1 => not found
         libmpi.so.1 => not found
         libdl.so.2 => /lib64/libdl.so.2 (0x00000034aec00000)
         libgfortran.so.1 => /usr/lib64/libgfortran.so.1
(0x00000034b2200000)
         libm.so.6 => /lib64/libm.so.6 (0x00000034ae400000)
         librt.so.1 => /lib64/librt.so.1 (0x00000034b2800000)
         libnsl.so.1 => /lib64/libnsl.so.1 (0x00000034b7e00000)
         libutil.so.1 => /lib64/libutil.so.1 (0x00000034bca00000)
         libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00000034b4400000)
         libpthread.so.0 => /lib64/libpthread.so.0 (0x00000034af000000)
         libc.so.6 => /lib64/libc.so.6 (0x00000034ae000000)
         /lib64/ld-linux-x86-64.so.2 (0x00000034adc00000)

so indeed the library is not found.  However, the make log shows:

  Linking in Units and Libraries
  /data/havi0/soft/ots/pkgs/openmpi-1.6.5/x86_64-linux_CentOS-5/bin/mpif90
  -ggdb -o flash4 Burn.o
  [...]
  ut_sysMemSummaryStats.o ut_sys_mem_usage.o workspace.o -L
  /data/havi0/soft/ots/pkgs/hdf5-1.8.11/x86_64-linux_CentOS-5/lib -lhdf5
  -lz

and the library does exist at the location given to the -L option:

geri% file
/data/havi0/soft/ots/pkgs/hdf5-1.8.11/x86_64-linux_CentOS-5/lib/libhdf5.so.8
/data/havi0/soft/ots/pkgs/hdf5-1.8.11/x86_64-linux_CentOS-5/lib/libhdf5.so.8:
symbolic link to `libhdf5.so.8.0.0'
geri% file
/data/havi0/soft/ots/pkgs/hdf5-1.8.11/x86_64-linux_CentOS-5/lib/libhdf5.so.8.0.0
/data/havi0/soft/ots/pkgs/hdf5-1.8.11/x86_64-linux_CentOS-5/lib/libhdf5.so.8.0.0:
ELF 64-bit LSB shared object, AMD x86-64, version 1 (SYSV), not stripped

Any ideas as to where I am going wrong?  Is there another version of
hdf5 which should be used?

Thanks,
Terry Gaetz