[FLASH-USERS] Unable to run for IO

Ganti, Himakar (gantihr) gantihr at mail.uc.edu
Wed Apr 28 17:10:28 EDT 2021


I am unable to run any simulation with IO. I am using the Docker container  icksa/flash4-deps with FLASH 4.6.2, with HDF5 1.8.11

Configure option runs fine

$ ./setup Sedov --auto +noio

When running the 'make' command, the following is encountered:

$ make -j XX

returns the following after it starts compiling the objects:

-L /usr/local/include/lib -lhdf5 -lz
/usr/local/lib/libhdf5.a(H5PL.o): In function `H5PL_term_interface':
H5PL.c:(.text+0xa7): undefined reference to `dlclose'
/usr/local/lib/libhdf5.a(H5PL.o): In function `H5PL_load':
H5PL.c:(.text+0x319): undefined reference to `dlsym'
H5PL.c:(.text+0x45c): undefined reference to `dlopen'
H5PL.c:(.text+0x475): undefined reference to `dlsym'
H5PL.c:(.text+0x5a4): undefined reference to `dlclose'
H5PL.c:(.text+0x629): undefined reference to `dlerror'
H5PL.c:(.text+0x83c): undefined reference to `dlclose'
collect2: error: ld returned 1 exit status
make: *** [flash4] Error 1

The simulation runs with +noio option, but no simulation (flow-domain files for visit) or plot files are generated in the object folder. Can anyone please help me with this?

Sincerely,
Himakar Ganti
Doctoral Candidate | Multiphase Flow and Combustion Lab | Aerospace Engineering & Engineering Mechanics
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