[FLASH-USERS] HDF5 error

Carla Nicolin Schoder a01302326 at unet.univie.ac.at
Tue Oct 5 10:15:01 EDT 2021


Dear FLASH community,

I hope someone can help me with the following problem.
I work with FLASH 3.2 and for the Sedov problem I get an HDF5 Error.

my modules:
hdf5/1.10.5, intel-mpi/2019.5, intel/19, parallel-netcdf/1.11.1, ..

my run:
./setup Sedov -auto
gmake -j 4
mpirun -np 4 ./flash3  --> ERROR:

the ERROR:
HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 0:
   #000: H5Ddeprec.c line 189 in H5Dopen1(): not a location
     major: Invalid arguments to routine
     minor: Inappropriate type
   #001: H5Gloc.c line 246 in H5G_loc(): invalid object ID
     major: Invalid arguments to routine
     minor: Bad value
flash3: io_h5_attribute.c:49: io_h5_attribute_create: Assertion `dsetID 
 >= 0' failed.
forrtl: error (76): Abort trap signal
Image              PC                Routine            Line        
Source
flash3             00000000005AF86B  Unknown               Unknown  
Unknown
libpthread-2.17.s  00002AD54C3575D0  Unknown               Unknown  
Unknown
libc-2.17.so       00002AD54C89C207  gsignal               Unknown  
Unknown
libc-2.17.so       00002AD54C89D8F8  abort                 Unknown  
Unknown
libc-2.17.so       00002AD54C895026  Unknown               Unknown  
Unknown
libc-2.17.so       00002AD54C8950D2  Unknown               Unknown  
Unknown
flash3             00000000004CB40D  Unknown               Unknown  
Unknown
flash3             00000000004D1EA1  Unknown               Unknown  
Unknown
flash3             00000000004E0979  Unknown               Unknown  
Unknown
flash3             000000000044C208  Unknown               Unknown  
Unknown
flash3             000000000044BC8F  Unknown               Unknown  
Unknown
flash3             000000000040BC0F  Unknown               Unknown  
Unknown
flash3             00000000004133E9  Unknown               Unknown  
Unknown
flash3             0000000000605456  Unknown               Unknown  
Unknown
libc-2.17.so       00002AD54C8883D5  __libc_start_main     Unknown  
Unknown
flash3             0000000000407CE9  Unknown               Unknown  
Unknown

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   RANK 0 PID 4328 RUNNING AT l48
=   KILLED BY SIGNAL: 6 (Aborted)
===================================================================================


If anyone has an idea, what might causes that error, I would be very 
happy if you would help me to solve this error.

Best, Carla Nicolin Schoder



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