[FLASH-USERS] How to extract and plot HDF5 data using yt

郑佳乐 zhengjl1103 at shu.edu.cn
Thu Feb 29 22:07:11 EST 2024


Dear all:


I tried several times loading hdf5 data in yt, but all failed. I am using linux ubuntu. 

Error is as follows:

layoneu at layoneu:~$ python


Python 3.10.12 (main, Nov 20 2023, 15:14:05) [GCC 11.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import yt
>>> ds = yt.load('sedov_forced_hdf5_plt_cnt_0000')
/home/layoneu/.local/lib/python3.10/site-packages/yt/sample_data/api.py:149: UserWarning: Storage directory from yt config doesn't exist (currently set to '/does/not/exist'). Current working directory will be used instead.
  warn(
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/layoneu/.local/lib/python3.10/site-packages/yt/_maintenance/deprecation.py", line 69, in inner
    return func(*args, **kwargs)
  File "/home/layoneu/.local/lib/python3.10/site-packages/yt/loaders.py", line 111, in load
    fn = str(lookup_on_disk_data(fn))
  File "/home/layoneu/.local/lib/python3.10/site-packages/yt/sample_data/api.py", line 186, in lookup_on_disk_data
    raise FileNotFoundError(err_msg)
FileNotFoundError: No such file or directory: 'sedov_forced_hdf5_plt_cnt_0000'.
>>> 

I cannot fix this error due to inproficiency in FLASH use, any help would be highly appreciated!
Best regards
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