It appears that in your Makefile.h you haven't specified the correct path for hdf5 library.<br>Anshu<br><br><div class="gmail_quote">On Mon, Jun 2, 2008 at 11:20 AM, Seyit Hocuk <<a href="mailto:seyit@astro.rug.nl">seyit@astro.rug.nl</a>> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi,<br>
<br>
I am in the middle of switching to FLASH3.0 after a lot of suggestions to do that. However, whenever I compile a standard problem, while making I get the error message shown below. It might be related to my compiler or to HDF5.<br>
<br>
The compiler is this:<br>
/opt/intel/fce/10.1.012/bin/ifort<br>
<br>
HDF5 version:<br>
I tried both 1.6.6 and 1.6.7<br>
<br>
The flags for the compiler I use are this:<br>
FFLAGS_OPT = -c -r8 -i4 -fast -ipo -I $(MPI_PATH)/include<br>
FFLAGS_DEBUG = -c -r8 -i4 -I $(MPI_PATH)/include<br>
FFLAGS_TEST = -c -r8 -i4 -I $(MPI_PATH)/include<br>
<br>
CFLAGS_HDF5 = -I $(HDF5_PATH)/include<br>
<br>
CFLAGS_OPT = -c -I$(MPI_PATH)/include<br>
CFLAGS_DEBUG = -c -g<br>
CFLAGS_TEST = -c -02<br>
<br>
<br>
UNAME -a :<br>
Linux si01 2.6.22-14 #6 SMP Tue Mar 11 15:43:58 CET 2008 x86_64 GNU/Linux<br>
<br>
<br>
<br>
Does anyone have any experience on this problem.<br>
<br>
Thanks,<br>
Seyit<br>
<br>
<br>
<br>
<br>
<br>
workspace.o -L/home/users/seyit/Libraries/Hdf5-166/lib -lhdf5 -lz -L /home/users/seyit/mpi/mpich2/lib -lmpich<br>
ipo: warning #11043: unresolved H5Fclose<br>
Referenced in io_h5file_interface.o<br>
ipo: warning #11043: unresolved H5check_version<br>
Referenced in io_h5file_interface.o<br>
ipo: warning #11043: unresolved H5Fopen<br>
Referenced in io_h5file_interface.o<br>
ipo: warning #11043: unresolved H5Fcreate<br>
Referenced in io_h5file_interface.o<br>
ipo: warning #11043: unresolved H5Dopen<br>
Referenced in io_h5read_bflags.o<br>
Referenced in io_h5read_blk_particle_info.o<br>
Referenced in io_h5read_blksize.o<br>
Referenced in io_h5read_bndbox.o<br>
Referenced in io_h5read_coords.o<br>
Referenced in io_h5read_generic_int_arr.o<br>
Referenced in io_h5read_generic_real_arr.o<br>
Referenced in io_h5read_gid.o<br>
Referenced in io_h5read_lists.o<br>
Referenced in io_h5read_localnp.o<br>
Referenced in io_h5read_lrefine.o<br>
Referenced in io_h5read_nodetype.o<br>
Referenced in io_h5read_particles.o<br>
Referenced in io_h5read_unknowns.o<br>
Referenced in io_h5read_which_child.o<br>
Referenced in io_h5write_bflags.o<br>
Referenced in io_h5write_blk_particle_info.o<br>
Referenced in io_h5write_blksize.o<br>
...<br>
...<br>
... etc.<br>
... etc.<br>
...<br>
...<br>
amr_initialize.F90(734): (col. 9) remark: LOOP WAS VECTORIZED.<br>
amr_initialize.F90(735): (col. 9) remark: FUSED LOOP WAS VECTORIZED.<br>
amr_initialize.F90(737): (col. 9) remark: FUSED LOOP WAS VECTORIZED.<br>
amr_initialize.F90(741): (col. 9) remark: LOOP WAS VECTORIZED.<br>
amr_initialize.F90(742): (col. 9) remark: LOOP WAS VECTORIZED.<br>
amr_initialize.F90(838): (col. 7) remark: LOOP WAS VECTORIZED.<br>
amr_initialize.F90(839): (col. 7) remark: LOOP WAS VECTORIZED.<br>
gr_initParameshArrays.F90(78): (col. 12) remark: LOOP WAS VECTORIZED.<br>
gr_initParameshArrays.F90(78): (col. 12) remark: LOOP WAS VECTORIZED.<br>
Grid_dump.F90(156): (col. 11) remark: LOOP WAS VECTORIZED.<br>
PhysicalConstants_init.F90(127): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(130): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(133): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(136): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(139): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(142): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(145): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(148): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(151): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(154): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(157): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(160): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(165): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(167): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
PhysicalConstants_init.F90(169): (col. 8) remark: BLOCK WAS VECTORIZED.<br>
Grid_init.F90(280): (col. 3) remark: LOOP WAS VECTORIZED.<br>
Grid_init.F90(375): (col. 3) remark: LOOP WAS VECTORIZED.<br>
Grid_init.F90(385): (col. 6) remark: LOOP WAS VECTORIZED.<br>
Particles_init.F90(108): (col. 3) remark: LOOP WAS VECTORIZED.<br>
Particles_init.F90(135): (col. 3) remark: LOOP WAS VECTORIZED.<br>
Particles_init.F90(182): (col. 6) remark: LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(96): (col. 11) remark: LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(114): (col. 20) remark: LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(117): (col. 12) remark: FUSED LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(124): (col. 17) remark: LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(133): (col. 17) remark: LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(136): (col. 14) remark: LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(171): (col. 12) remark: FUSED LOOP WAS VECTORIZED.<br>
Grid_initDomain.F90(189): (col. 14) remark: LOOP WAS VECTORIZED.<br>
Driver_verifyInitDt.F90(98): (col. 14) remark: LOOP WAS VECTORIZED.<br>
CosmologicalFunctions.F90(611): (col. 6) remark: LOOP WAS VECTORIZED.<br>
CosmologicalFunctions.F90(618): (col. 6) remark: LOOP WAS VECTORIZED.<br>
ld: skipping incompatible /home/users/seyit/Libraries/Hdf5-166/lib/libhdf5.so when searching for -lhdf5<br>
ld: skipping incompatible /home/users/seyit/Libraries/Hdf5-166/lib/libhdf5.a when searching for -lhdf5<br>
ld: cannot find -lhdf5<br>
make: *** [flash3] Error 1<br>
<br>
</blockquote></div><br>