I provided the read permissions to the output file. Now, I get the following message when opening:<br><br>--------------------------------------------------------<br><br>
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<p style="margin: 0px; text-indent: 0px;">VisIt could not read from the file "/home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_* database".</p>
<p style="margin: 0px; text-indent: 0px;"></p>
<p style="margin: 0px; text-indent: 0px;">The generated error message was:</p>
<p style="margin: 0px; text-indent: 0px;"></p>
<p style="margin: 0px; text-indent: 0px;">There was an error opening /home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_* database. It may be an invalid file. VisIt tried using the following file format readers to open the file: Silo</p>
<br>-----------------------------------------------------------<br><br>Thanks & Regards,<br>Kunal<br><br><div class="gmail_quote">On Mon, Jun 28, 2010 at 1:12 PM, Kunal Rao <span dir="ltr"><<a href="mailto:kunalgrao@gmail.com">kunalgrao@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Alex,<br><br>Thanks for your reply.<br><br>My output files from FLASH3.2 simulations are as follows:<br>
sedov.dat <br>sedov.log<br>sedov_hdf5_chk_0000 <br>sedov_hdf5_chk_0001 <br>sedov_hdf5_chk_0002<br>
sedov_hdf5_chk_0003 <br>sedov_hdf5_chk_0004 <br>sedov_hdf5_chk_0005<br>sedov_hdf5_plt_cnt_0000<br>sedov_forced_hdf5_plt_cnt_0000 <br><br>I have installed visit 2.0.0 and am able to open the visit gui. When I open one of the above mentioned output files, I get the following message:<br>
<br>-------------------------------------------------------------------------<br><br>
<p style="margin: 0px; text-indent: 0px;">VisIt could not read from the file "/home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_* database".</p>
<p style="margin: 0px; text-indent: 0px;"></p>
<p style="margin: 0px; text-indent: 0px;">The generated error message was:</p>
<p style="margin: 0px; text-indent: 0px;"></p>
<p style="margin: 0px; text-indent: 0px;">There was an error opening /home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_* database. It may be an invalid file. VisIt tried using the following file format readers to open the file: <No suitable plugins were identified></p>
<p style="margin: 0px; text-indent: 0px;"></p>
<p style="margin: 0px; text-indent: 0px;">The file format reader issued the following error message, which may (or may not) be indicative of the problem:</p>
<p style="margin: 0px; text-indent: 0px;">No read permissions for /home/kunalgrao/Desktop/downloads/FLASH3.2/object/sedov_hdf5_chk_0000.</p><br>-------------------------------------------------------------------------------------<br>
<br>Can you please tell me how it works without having to manually build any plugin?<br><br>Thanks & Regards,<br><font color="#888888">Kunal</font><div><div></div><div class="h5"><br><br><br><div class="gmail_quote">
On Mon, Jun 28, 2010 at 12:07 PM, Alexander Wagner <span dir="ltr"><<a href="mailto:alexander.y.wagner@googlemail.com" target="_blank">alexander.y.wagner@googlemail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Kunal,<br>
<br>
I was always under the impression that the plugins were already shipped in VisIt. At least for me, VisIt works with FLASH3.2 data files without having to manually build the plugins.<br>
<br>
Best wishes,<br>
Alex<div><div></div><div><br>
<br>
<br>
On 06/29/2010 01:30 AM, Kunal Rao wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi<br>
<br>
I am trying to get the VisIt tool working on Ubuntu 9.10 for FLASH. I have the visit tool installed and am trying to add the 1st plugin (out of 2 as mentioned on <a href="http://flash.uchicago.edu/website/codesupport/visit/" target="_blank">http://flash.uchicago.edu/website/codesupport/visit/</a> ) so as to view the output files produced by FLASH.<br>
<br>
There are 3 steps involved in adding the 1st plugin. I did the first 2 i.e.<br>
xml2info -clobber FLASH.xml<br>
xml2makefile -clobber FLASH.xml<br>
<br>
but the third one i.e. make is giving me an error. This is what I get when I do the make:<br>
<br>
-----------------------------------------------------------------------------------------------------------------<br>
<br>
root@kunalgrao-laptop:~/Desktop/installs/FLASH# make HDF5_INCLUDE=-I/home/kunalgrao/Desktop/installs/hdf5/include HDF5_LIB=-L/home/kunalgrao/Desktop/installs/hdf5/libs/libhdf5.a |tee make.log<br>
<br>
****************************************************************************<br>
*** Building FLASH Database Plugin<br>
****************************************************************************<br>
source='avtFLASHFileFormat.C' object='avtFLASHFileFormat.o' libtool=no \<br>
depfile='./avtFLASHFileFormat.d' tmpdepfile='./avtFLASHFileFormat.tmp_d' \<br>
depmode=gcc3 /usr/local/visit/1.11.2/linux-intel/bin/depcomp \<br>
g++ -D_LARGEFILE64_SOURCE -Wno-deprecated -O2 -I/home/kunalgrao/Desktop/installs/hdf5/include -I/misc/gapps/mpich/1.2.4/Linux/serial/64/debug/include -I/usr/local/visit/1.11.2/linux-intel/include/cognomen -I/usr/local/visit/1.11.2/linux-intel/include/vtk -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Common -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Filtering -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Graphics -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Hybrid -I/usr/local/visit/1.11.2/linux-intel/include/vtk/IO -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Imaging -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Rendering -I/usr/local/visit/1.11.2/linux-intel/include/vtk/Utilities -I. -I/home/kunalgrao/Desktop/installs/mpich/include -I/usr/local/visit/1.11.2/linux-intel/include -I/usr/local/visit/1.11.2/linux-intel/include/visit -I/usr/local/visit/1.11.2/linux-intel/include/python -c avtFLASHFileFormat.C -o avtFLASHFileFormat.o<br>
avtFLASHFileFormat.C: In member function ‘vtkPolyData* avtFLASHFileFormat::GetMortonCurveSubset(int)’:<br>
avtFLASHFileFormat.C:1058: error: no matching function for call to ‘find(__gnu_cxx::__normal_iterator<int*, std::vector<int, std::allocator<int> > >, __gnu_cxx::__normal_iterator<int*, std::vector<int, std::allocator<int> > >, int&)’<br>
make: *** [avtFLASHFileFormat.o] Error 1<br>
--------------------------------------------------------------------------------------------------------------<br>
<br>
I am also attaching the Makefile for your reference. Kindly let me know how to get it right.<br>
<br>
Thanks & Regards,<br>
Kunal<br>
<br>
<br>
----------------------------------------------------------------------------------------------------<br>
<br>
</blockquote>
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