The fact that density is 0 indicates that you may have a problem in the initialization. And if it is out of the box simulation, then of course the initialization routine is the well tested one used daily in FLASH test suite. Could you try setting it up without the portable option ? If you have made any changes to the default initialization or flash.par file, could you first try to run the out of the box version.<br>
<br>If that also doesn't help, then there may be some issue with your libraries/compiler configuration<br>Anshu<br><br><br><div class="gmail_quote">On Thu, Jul 8, 2010 at 11:43 PM, Kunal Rao <span dir="ltr"><<a href="mailto:kunalgrao@gmail.com">kunalgrao@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi<div><br></div><div> I am still stuck with this. Can anyone please let me know how to resolve it ?</div>
<div><br></div><div>Thanks & Regards,</div><div>Kunal<br><br><div class="gmail_quote">On Wed, Jul 7, 2010 at 4:11 PM, Kunal Rao <span dir="ltr"><<a href="mailto:kunalgrao@gmail.com" target="_blank">kunalgrao@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div><font color="#333399">Hi</font></div><div><font color="#333399"><br></font></div><div><font color="#333399">I have setup FLASH3.2 Sedov simulation as follows:</font></div>
<div><font color="#333399"><br></font></div><div><font color="#333399">$./setup Sedov -auto -makefile=pg -ostype=Linux -portable +noio </font></div><div><font color="#333399"><br>
</font></div><div><font color="#333399">It is successfully compiling but when I run it on single processor using $./flash3.exe I get the following error:</font></div><div><br></div><div>------------------------------------------------------------------------------------------------------------------</div>
<div> Perhaps the initialization routine is wrong..... or</div><div> perhaps the runtime parameter eosMode is wrong.</div><div> Check constants.h to determine value of MODE_DENS_??</div><div><br></div><div> Driver_abort called. See log file for details.</div>
<div> Error message is</div><div> [Eos_putData] ERROR Density or Internal Energy are zero after a call to EOS!</div><div> Calling MPI_Abort() for shutdown in 2 seconds!</div><div><br></div><div>job aborted:</div><div>[ranks] message</div>
<div><br></div><div>[0] application aborted</div><div>aborting MPI_COMM_WORLD, error 1, comm rank 0</div><div><br></div><div>-----------------------------------------------------------------------------------------------------------------------------</div>
<div><br></div><div><font color="#333399">I checked in my constants.h the value of MODE_DENS_?? is as follows:</font></div><div><font color="#333399"><br></font></div><div>
-------------------------------------------------------</div><div><div>#define MODE_DENS_TEMP 101</div><div>#define MODE_DENS_EI 102</div><div>#define MODE_DENS_PRES 103</div></div><div>--------------------------------------------------------</div>
<div><br></div><div><font color="#333399">and my Sedov.log file contains the following:</font></div><div><br></div><div>------------------------------------------------------------------------------------------------------------------------------</div>
<div><br></div><div><div> [ 07-07-2010 15:50:15.490 ] [GRID amr_refine_derefine]: initiating refinement</div><div> [GRID amr_refine_derefine] min blks 1 max blks 1 tot blks 1</div><div> [GRID amr_refine_derefine] min leaf blks 1 max leaf blks 1 tot leaf blks 1</div>
<div> [ 07-07-2010 15:50:15.490 ] [GRID amr_refine_derefine]: refinement complete</div><div> [ 07-07-2010 15:50:15.505 ] [GRID gr_expandDomain]: iteration=1, create level=2</div><div> INFO: Grid_fillGuardCells is ignoring masking.</div>
<div> [ 07-07-2010 15:50:15.505 ] [mpi_amr_comm_setup]: buffer_dim_send=1, buffer_dim_recv=1</div><div> [ 07-07-2010 15:50:15.505 ] WARNING after gc filling: min. unk(DENS_VAR)=0.000</div><div>000000000000000000 PE=0 block=1 type=1</div>
<div> [ 07-07-2010 15:50:15.521 ] WARNING after gc filling: min. unk(ENER_VAR)=0.000</div><div>000000000000 PE=0 block=1 type=1</div><div> [ 07-07-2010 15:50:15.521 ] WARNING after gc filling: min. unk(EINT_VAR)=0.000</div>
<div>000000000000 PE=0 block=1 type=1</div><div> [Eos_putData] ERROR Density or Internal Energy are zero after a call to EOS!^M</div><div> [ 07-07-2010 15:50:15.536 ] [DRIVER_ABORT]: Driver_abort() called by PE 0</div><div>
[ 07-07-2010 15:50:15.536 ] abort_message: [Eos_putData] ERROR Density or Inte</div><div>rnal Energy are zero after a call to EOS!</div></div><div><br></div><div>-----------------------------------------------------------------------------------------------------------------------------</div>
<div><br></div><div><font color="#333399">Can you please suggest what changes I need to make to have it working properly?</font></div><div><font color="#333399"><br></font></div>
<div><font color="#333399">Thanks & Regards,</font></div><div><font color="#333399">Kunal</font></div><div><font color="#333399"><br></font></div>
<div><font color="#333399">P.S. I am attaching my flash.par file for your reference.</font></div><div><br></div>
</blockquote></div><br></div>
</blockquote></div><br><br clear="all"><br>-- <br>Anshu Dubey<br>Associate Director and CS/Applications Group Leader<br>ASC/Flash Center<br>Fellow, Computation Institute<br>University of Chicago and Argonne National Laboratory<br>
773 834 2999 (office)<br>312 420 0033 (mobile)<br>773 834 3230 (fax)<br>