<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Diego,<div><br></div><div>I am also noticing that it did not find the site directory. The easiest thing to do is to add this to the setup script line:</div><div><br></div><div>./setup Sedov -auto -site=krakenpf9.nics.utk.edu</div><div><br></div><div>Best,</div><div><br></div><div>John Z<br><div><br><div><div>On Jul 10, 2012, at 3:56 PM, Diego wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi John, I'ts Diego once more... I am sorry to bother you, but I am new to kraken. <br><br>I am trying to get flash (version 2.5) running in kraken, but the sedov shock test tube problem is not even able to compile.<br>
<br>
I already have flash2.5 in my home directory and now I want to make sure thet the sedov test tube is working fine. For this I put the Makefile.h in the correspondent sites directory (diego/flash2.5/source/sites/<a href="http://krakenpf9.nics.utk.edu/">krakenpf9.nics.utk.edu</a>).<br>
<div id=":3ef">I checked your Makefile.h and its basically the same as what I had before... supposedly leaving the paths blank the wrapper would manage to find the HD5 and mpi. <br>FCOMP = ftn<br>CCOMP = cc<br>CPPCOMP = CC<br>
LINK = ftn<br><br>The problem is that when I compile the sedov test tube problem (./setup sedov -auto) I have an error.<br>
<br>It says:<br>--------------------------------------------------------------<br>diego@krakenpf1:~/flash2.5> ./setup sedov -autochecking for needed files and directories<br> checking sites Aliases file<br> couldn't open sites Aliases file<br>
site directory for site <a href="http://krakenpf1.nics.utk.edu/">krakenpf1.nics.utk.edu</a> not found;<br> using prototype Linux<br>generating default Modules file<br> renaming original to Modules.bak<br>removing old links in build directory object<br>
scanning /nics/b/home/diego/flash2.5/Modules file for included modules<br> database/amr/paramesh2.0<br> driver/time_dep<br> gravity/null<br> hydro/explicit/split/ppm<br> io/amr/hdf5_serial<br> materials/eos/gamma<br>
mesh/amr/paramesh2.0/second_order_old<br> util/tools<br> util/wrapping<br>checking for default sub-modules in included modules<br>checking that no mutually exclusive sub-modules are included together<br>looking for paths of non-included modules<br>
.DS_Store is not a valid directory<br>--------------------------------------------------------------<br><br>Can you help me with this problem?<br><br>Or before doing the ./setup sedov -auto do I have to load any module (or modules)?<br>
<br>Thanks.<br><br>Diego<br></div>
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