<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Hey Mark,</div><div><br></div><div>Good to know! Though I ended up just compiling hdf5 1.6.10 myself. I did some tests and it seems to be working, so I'm ready to start trying to submit real jobs anyway :)</div><div><br></div><div>Cheers,</div><div>-Dave</div><div><br></div><br><div><div>On 2013-10-03, at 13:28 , Mark L Richardson <<a href="mailto:Mark.L.Richardson@asu.edu">Mark.L.Richardson@asu.edu</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr"><div>Hi Dave,</div><div><br></div>You can use version 1.8 of HDF, just make sure you say to use the 1.6 API in your sites Makefile.<div><br></div><div>For example, on Stampede I have:</div><div><div><br></div>
<div>F90FLAGS = -I ${TACC_HDF5_INC} -DH5_USE_16_API</div></div><div>CFLAGS_HDF5 = -I ${TACC_HDF5_INC} -DH5_USE_16_API</div><div><br></div><div>Good luck,</div><div> -Mark</div><div><br></div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Thu, Oct 3, 2013 at 6:53 AM, David <span dir="ltr"><<a href="mailto:david.john.williamson@gmail.com" target="_blank">david.john.williamson@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word"><div>Hi,</div><div><br></div><div>You're right - I've got an "mvapich2/1.6-intel" module, ifort etc. There are intel hdf5 1.8.x modules, but not any hdf5 1.6.x modules. It also looks like the premade packages for 1.6.x you can download are all for gnu compilers, so I'll have to compile an ifort version myself, which should be no problem.</div>
<div><br></div><div>Cheers,</div><div>Dave</div><div><div class="h5"><div><br></div><br><div><div>On 2013-10-02, at 12:22 PM, Dean Townsley <<a href="mailto:Dean.M.Townsley@ua.edu" target="_blank">Dean.M.Townsley@ua.edu</a>> wrote:</div>
<br><blockquote type="cite">
<div bgcolor="#FFFFFF" text="#000000">
Hi David,<br>
<br>
From the page you link about Colosse, what might be most useful is
if you gave the output of 'module avail' which should show what
compilers, mpi stacks, and libraries are available.<br>
<br>
My presumption would be that there would be an mvapich MPI stack
based on intel compilers available, as that is typical on intel
architectures with infiniband switches. You may or may not need to
build hdf5 yourself.<br>
<br>
Later,<br>
Dean<br>
<br>
<br>
<br>
<div>On 10/01/2013 09:07 AM, David wrote:<br>
</div>
<blockquote type="cite">
<div>Hi,</div>
<div><br>
</div>
<div>So Colosse is actually down for maintenance today, but I can
check out some stuff on Guilimin. What kind of information is
useful? It looks like it has gfortran and gcc for compilers.</div>
<div><br>
</div>
<div>uname -a gives</div>
<div><br>
</div>
<div>
<div>Linux lg-1r14-n04 2.6.18-308.24.1.el5 #1 SMP Tue Dec 4
17:43:34 EST 2012 x86_64 x86_64 x86_64 GNU/Linux</div>
</div>
<div><br>
</div>
<div>if knowing the Linux distribution is helpful.</div>
<div><br>
</div>
<div>They have hardware information here: <a href="http://www.calculquebec.ca/index.php/en/resources/compute-servers/colosse" target="_blank">http://www.calculquebec.ca/index.php/en/resources/compute-servers/colosse</a> -
Intel Xeon processors if that's important.</div>
<div><br>
</div>
<div>Anything else that would help?</div>
<div><br>
</div>
<div>Cheers,</div>
<div>-David</div>
<br>
<div>
<div>On 2013-10-01, at 9:43 AM, John ZuHone <<a href="mailto:jzuhone@milkyway.gsfc.nasa.gov" target="_blank">jzuhone@milkyway.gsfc.nasa.gov</a>>
wrote:</div>
<br>
<blockquote type="cite">Hi David,<br>
<br>
I'm not aware of one, but could you give us some details on
the machines? We might be able to suggest a similar machine
for you to try modifying the Makefile.h.<br>
<br>
Best,<br>
<br>
John Z<br>
<br>
On Oct 1, 2013, at 9:41 AM, David <<a href="mailto:david.john.williamson@gmail.com" target="_blank">david.john.williamson@gmail.com</a>>
wrote:<br>
<br>
<blockquote type="cite">Hello,<br>
<br>
I'm looking at getting FLASH3 running on either Colosse or
Guilimin, two of the clusters I've just recently got access
to at Calcul-Quebec. I was wondering if there is an existing
sitefile floating around anywhere. If there isn't, then no
worries, I'll sort it out myself, but I figure there's no
point in reinventing the wheel :)<br>
<br>
Cheers,<br>
David Williamson<br>
</blockquote>
<br>
</blockquote>
</div>
<br>
</blockquote>
<br>
</div>
</blockquote></div><br></div></div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br>Mark Richardson, <br><a href="mailto:Mark.L.Richardson@asu.edu" target="_blank">Mark.L.Richardson@asu.edu</a><div>Ph.D. Candidate: Astrophysics<br>
ISTB4 623<br>School of Earth and Space Exploration<br>Arizona State University<br>480 318-4449<br><a href="http://www.public.asu.edu/~mlricha4" target="_blank">www.public.asu.edu/~mlricha4</a><br></div>
</div>
</blockquote></div><br></body></html>