<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Marco,<div class=""><br class=""></div><div class="">In your Makefile.h, make sure you have your F90FLAGS such that:</div><div class=""><br class=""></div><div class="">F90FLAGS = -I ${HDF5_PATH}/include -DH5_USE_16_API</div><div class=""><br class=""></div><div class="">and LIB_HDF5 should also include the fortran flag such that:</div><div class=""><br class=""></div><div class="">LIB_HDF5 = -L${HDF5_PATH}/lib -lhdf5_fortran -lhdf5 -lz </div><div class=""><br class=""></div><div class="">Try that and let me know if it compiles! It should… I think… But there has been some significant code drift.</div><div class=""><br class=""></div><div class="">Sean</div><div class=""><br class=""></div><div class=""><div><blockquote type="cite" class=""><div class="">On Jul 29, 2016, at 3:20 AM, Marco Limongi <<a href="mailto:marco.limongi@oa-roma.inaf.it" class="">marco.limongi@oa-roma.inaf.it</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Dear Sean,</div><div class=""><br class=""></div><div class="">I am trying to test the CCSN with FLASH4.3.</div><div class="">In the following the sequence of operations I am doing:</div><div class=""><br class=""></div><div class="">setup:</div><div class=""><div class="">--------------------------------------------------------------------------------------------------------------------------------------------------------------------------</div><div class="">stars@lucifero:~/discoNAS/FLASH/FLASH4.3$ ./setup CCSN -auto -1d +spherical -objdir ccsn1d -nxb=16 threadBlockList=False +pm4dev threadWithinBlock=False +newMpole +uhdopt </div><div class="">Processing Shortcut file:</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/bin/setup_shortcuts.txt</div><div class=""><br class=""></div><div class="">***WARNING*** Ignoring unknown shortcut +uhdopt while expanding .</div><div class=""><br class=""></div><div class="">checking for needed files and directories</div><div class=""> checking sites Aliases file</div><div class=""> site directory for site lucifero not found;</div><div class=""> using prototype Linux</div><div class="">generating default Units file</div><div class=""> Driver/DriverMain/Split</div><div class=""> Grid/GridBoundaryConditions</div><div class=""> Grid/GridMain/paramesh/interpolation/Paramesh4/prolong</div><div class=""> Grid/GridMain/paramesh/interpolation/prolong</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/headers</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/mpi_source</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/source</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/utilities/multigrid</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/flash_avoid_orrery</div><div class=""> Grid/GridSolvers/Multipole_new</div><div class=""> Grid/localAPI</div><div class=""> IO/IOMain/hdf5/serial/PM</div><div class=""> IO/localAPI</div><div class=""> PhysicalConstants/PhysicalConstantsMain</div><div class=""> RuntimeParameters/RuntimeParametersMain</div><div class=""> Simulation/SimulationMain/CCSN</div><div class=""> flashUtilities/contiguousConversion</div><div class=""> flashUtilities/general</div><div class=""> flashUtilities/interpolation/oneDim</div><div class=""> flashUtilities/nameValueLL</div><div class=""> flashUtilities/sorting/quicksort</div><div class=""> flashUtilities/system/memoryUsage/legacy</div><div class=""> monitors/Logfile/LogfileMain</div><div class=""> monitors/Timers/TimersMain/MPINative</div><div class=""> physics/Eos/EosMain/Nuclear/kernel</div><div class=""> physics/Eos/localAPI</div><div class=""> physics/Gravity/GravityMain/Poisson/Multipole</div><div class=""> physics/Hydro/HydroMain/split/PPM/PPMKernel</div><div class=""> physics/Hydro/localAPI</div><div class=""> physics/RadTrans/RadTransMain/NeutrinoLeakage</div><div class=""> physics/RadTrans/localAPI</div><div class=""> physics/sourceTerms/Deleptonize/DeleptonizeMain</div><div class=""> physics/sourceTerms/Deleptonize/localAPI</div><div class="">scanning /home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/Units file for included</div><div class="">units</div><div class=""> Driver/DriverMain/Split</div><div class=""> Grid/GridBoundaryConditions</div><div class=""> Grid/GridMain/paramesh/interpolation/Paramesh4/prolong</div><div class=""> Grid/GridMain/paramesh/interpolation/prolong</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/headers</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/mpi_source</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/source</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/PM4_package/utilities/multigrid</div><div class=""> Grid/GridMain/paramesh/paramesh4/Paramesh4dev/flash_avoid_orrery</div><div class=""> Grid/GridSolvers/Multipole_new</div><div class=""> Grid/localAPI</div><div class=""> IO/IOMain/hdf5/serial/PM</div><div class=""> IO/localAPI</div><div class=""> PhysicalConstants/PhysicalConstantsMain</div><div class=""> RuntimeParameters/RuntimeParametersMain</div><div class=""> Simulation/SimulationMain/CCSN</div><div class=""> flashUtilities/contiguousConversion</div><div class=""> flashUtilities/general</div><div class=""> flashUtilities/interpolation/oneDim</div><div class=""> flashUtilities/nameValueLL</div><div class=""> flashUtilities/sorting/quicksort</div><div class=""> flashUtilities/system/memoryUsage/legacy</div><div class=""> monitors/Logfile/LogfileMain</div><div class=""> monitors/Timers/TimersMain/MPINative</div><div class=""> physics/Eos/EosMain/Nuclear/kernel</div><div class=""> physics/Eos/localAPI</div><div class=""> physics/Gravity/GravityMain/Poisson/Multipole</div><div class=""> physics/Hydro/HydroMain/split/PPM/PPMKernel</div><div class=""> physics/Hydro/localAPI</div><div class=""> physics/RadTrans/RadTransMain/NeutrinoLeakage</div><div class=""> physics/RadTrans/localAPI</div><div class=""> physics/sourceTerms/Deleptonize/DeleptonizeMain</div><div class=""> physics/sourceTerms/Deleptonize/localAPI</div><div class="">Computing default values for options not specified on command line</div><div class="">Using Makefile.h: /home/stars/discoNAS/FLASH/FLASH4.3/sites/Prototypes/Linux/Makefile.h</div><div class="">generating Makefile</div><div class="">SUCCESS</div><div class="">--------------------------------------------------------------------------------------------------------------------------------------------------------------------------</div></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">make:</div><div class=""><div class="">--------------------------------------------------------------------------------------------------------------------------------------------------------------------------</div></div><div class="">……</div><div class="">……</div><div class=""><div class="">/usr/local/mpich//bin/mpif90 -ggdb -c -O2 -fdefault-real-8 -fdefault-double-8 -Wuninitialized -DMAXBLOCKS=1000 -DNXB=16 -DNYB=1 -DNZB=1 -DN_DIM=1 readtable.F90</div><div class="">readtable.F90:28.6:</div><div class=""><br class=""></div><div class=""> use hdf5 </div><div class=""> 1</div><div class="">Fatal Error: Can't open module file 'hdf5.mod' for reading at (1): No such file or directory</div><div class="">make: *** [readtable.o] Error 1</div><div class=""><div class="">--------------------------------------------------------------------------------------------------------------------------------------------------------------------------</div></div></div><div class=""><br class=""></div><div class="">I have installed HDF5 with Fortran (gfortran) binding, in fact I could find hdf5.mod in /usr/local/hdf5/include.</div><div class="">After copying hdf5.mod from /usr/local/hdf5/include to ccsn1d/ and recompiled again, I got the following linking error:</div><div class=""><br class=""></div><div class=""><div class="">--------------------------------------------------------------------------------------------------------------------------------------------------------------------------</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:51: undefined reference to `__h5lib_MOD_h5open_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:53: undefined reference to `__h5f_MOD_h5fopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:59: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:60: undefined reference to `__h5d_provisional_MOD_h5dread_integer_scalar'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:61: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:68: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:69: undefined reference to `__h5d_provisional_MOD_h5dread_integer_scalar'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:70: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:77: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:78: undefined reference to `__h5d_provisional_MOD_h5dread_integer_scalar'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:79: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:90: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:91: undefined reference to `__h5_dble_interface_MOD_h5dread_double_1'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:92: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:98: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:99: undefined reference to `__h5_dble_interface_MOD_h5dread_double_1'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:100: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:105: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:106: undefined reference to `__h5_dble_interface_MOD_h5dread_double_1'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:107: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:147: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:148: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:149: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:152: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:153: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:154: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:157: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:158: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:159: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:162: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:163: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:164: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:167: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:168: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:169: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:172: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:173: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:174: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:177: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:178: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:179: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:182: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:183: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:184: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:189: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:190: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:191: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:195: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:196: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:197: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:201: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:202: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:203: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:207: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:208: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:209: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:214: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:215: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:216: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:220: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:221: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:222: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:226: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:227: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:228: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:232: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:233: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:234: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:240: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:241: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:242: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:246: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:247: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:248: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:253: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:254: undefined reference to `__h5_dble_interface_MOD_h5dread_double_3'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:255: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:260: undefined reference to `__h5d_MOD_h5dopen_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:261: undefined reference to `__h5_dble_interface_MOD_h5dread_double_scalar'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:262: undefined reference to `__h5d_MOD_h5dclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:270: undefined reference to `__h5f_MOD_h5fclose_f'</div><div class="">/home/stars/discoNAS/FLASH/FLASH4.3/ccsn1d/readtable.F90:272: undefined reference to `__h5lib_MOD_h5close_f'</div><div class="">collect2: error: ld returned 1 exit status</div><div class="">make: *** [flash4] Error 1</div></div><div class=""><div class="">--------------------------------------------------------------------------------------------------------------------------------------------------------------------------</div></div><div class=""><br class=""></div><div class="">Can anybody help me?</div><div class="">Maybe I did not understand exactly what it is meant for HDF5 library with Fortran bindings.</div><div class=""><br class=""></div><div class="">Thank you,</div><div class="">Marco</div><div class=""><br class=""></div><div class=""><br class=""></div><br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 29, 2014, at 8:22 PM, Sean Couch <<a href="mailto:smc@flash.uchicago.edu" class="">smc@flash.uchicago.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><div class="">Hi Hava,<br class=""><div class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><br class=""></div><div class="">In its current incarnation, the Nuclear EOS on which CCSN depends requires an HDF5 library with the Fortran bindings built in. If you do not need the Nuclear EOS (i.e., you aren't doing actually stellar core collapse simulations) then you can get rid of the Nuclear EOS and it should compile. Or, rebuild your HDF5 library with Fortran bindings.</div><div class=""><br class=""></div><div class="">Sean</div><div class=""><br class=""><div apple-content-edited="true" class="">
<div style="font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px;"><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; border-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-stroke-width: 0px;"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><br class="Apple-interchange-newline">--------------------------------------------------------</div><div class="">Sean M. Couch</div><div class="">Hubble Fellow</div><div class="">Flash Center for Computational Science</div><div class="">Department of Astronomy & Astrophysics</div><div class="">The University of Chicago</div><div class="">5747 S Ellis Ave, Jo 315</div><div class="">Chicago, IL 60637</div><div class="">(773) 702-3899</div><div class=""><a href="http://www.flash.uchicago.edu/~smc" class="">www.flash.uchicago.edu/~smc</a></div><div class=""><br class=""></div></div></span></span></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline"></div></div></div></div></div><blockquote type="cite" class=""><div class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><div apple-content-edited="true" class="">
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<br class=""><div class=""><div class="">On Jul 29, 2014, at 1:10 PM, Hava Turkakin <<a href="mailto:turkakin@ualberta.ca" class="">turkakin@ualberta.ca</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite" class="">Hi<br class="">I am trying to compile CCSN and getting following error? Can anybody<br class="">help me with this?<br class="">*********************************************************************************************************<br class="">readtable.F90(6): error #7013: This module file was not generated by<br class="">any release of this compiler. [HDF5]<br class=""> use hdf5<br class="">------^<br class="">readtable.F90(15): error #6683: A kind type parameter must be a<br class="">compile-time constant. [HID_T]<br class=""> integer(HID_T) file_id,dset_id,dspace_id<br class="">----------^<br class="">readtable.F90(16): error #6683: A kind type parameter must be a<br class="">compile-time constant. [HSIZE_T]<br class=""> integer(HSIZE_T) dims1(1), dims3(3)<br class="">----------^<br class="">readtable.F90(31): error #6404: This name does not have a type, and<br class="">must have an explicit type. [H5F_ACC_RDONLY_F]<br class=""> call h5fopen_f (trim(adjustl(eos_filename)), H5F_ACC_RDONLY_F, file_id, error)<br class="">-----------------------------------------------^<br class="">readtable.F90(38): error #6404: This name does not have a type, and<br class="">must have an explicit type. [H5T_NATIVE_INTEGER]<br class=""> call h5dread_f(dset_id, H5T_NATIVE_INTEGER, nrho, dims1, error)<br class="">--------------------------^<br class="">readtable.F90(69): error #6404: This name does not have a type, and<br class="">must have an explicit type. [H5T_NATIVE_DOUBLE]<br class=""> call h5dread_f(dset_id, H5T_NATIVE_DOUBLE, logrho, dims1, error)<br class="">--------------------------^<br class="">compilation aborted for readtable.F90 (code 1)<br class="">gmake: *** [readtable.o] Error 1<br class="">***************************************************************************<br class="">Thank you<br class="">-- <br class="">Hava Turkakin<br class="">PhD Candidate<br class="">University of Alberta<br class="">Space Physics Research Group<br class=""></blockquote></div><br class=""></div></div></div></blockquote></div><br class=""></div></div></blockquote></div><br class=""><div class="">
******************************************<br class="">Dr. Marco Limongi<br class="">INAF - Osservatorio Astronomico di Roma<br class="">Via Frascati 33, I-00040<br class="">Monteporzio Catone, Rome, Italy<br class="">Tel: 0039-06-94286-443<br class="">Fax: 0039-06-9447-243<br class="">email: <a href="mailto:marco.limongi@oa-roma.inaf.it" class="">marco.limongi@oa-roma.inaf.it</a><br class="">Skype Internet Phone User : Marco Limongi<br class="">Web Page: <a href="http://www.oa-roma.inaf.it/limongi/" class="">http://www.oa-roma.inaf.it/limongi/</a><br class="">ORCID ID: 0000-0003-0636-7834<br class="">******************************************
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