<div dir="ltr">Hi Chandrasekhar,<br>The error `H5Pset_fapl_mpio' occurs in two cases: one is the installation of Mpich which you might have installed two versions of Mpi and the other case is that you are trying to install both Serial HDF and Parallel HDF in the same destination, try to uninstall the serial HDF and use Parallel HDF which may work.<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Jan 3, 2017 at 11:30 PM, <span dir="ltr"><<a href="mailto:flash-users-request@flash.uchicago.edu" target="_blank">flash-users-request@flash.uchicago.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send flash-users mailing list submissions to<br>
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Today's Topics:<br>
<br>
1. Re: error in compiling the flash for laserslab problem<br>
(Scott Feister)<br>
<br>
<br>
------------------------------<wbr>------------------------------<wbr>----------<br>
<br>
Message: 1<br>
Date: Tue, 3 Jan 2017 10:27:20 -0600<br>
From: Scott Feister <<a href="mailto:sfeister@gmail.com">sfeister@gmail.com</a>><br>
Subject: Re: [FLASH-USERS] error in compiling the flash for laserslab<br>
problem<br>
To: chandra sekhar Shukla <<a href="mailto:chandrasekhar.shukla@gmail.com">chandrasekhar.shukla@gmail.<wbr>com</a>><br>
Cc: flash-users <<a href="mailto:flash-users@flash.uchicago.edu">flash-users@flash.uchicago.<wbr>edu</a>><br>
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<CAP4MZ+o=<a href="mailto:8DcrnKZ7PtrQEixi5iwN0UhjKAmEQ_ytohU0w%2Bjd3w@mail.gmail.com">8DcrnKZ7PtrQEixi5iwN<wbr>0UhjKAmEQ_ytohU0w+jd3w@mail.<wbr>gmail.com</a>><br>
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<br>
Hi Chandrasekhar,<br>
<br>
Just on quick glance, it looks like there may be *HDF5 *errors (I/O) and *Hypre<br>
*errors (matrix operations library). Did you install these libraries<br>
yourself? Which versions of each are you using?<br>
<br>
Best,<br>
<br>
Scott<br>
<br>
<br>
Scott Feister, Ph.D.<br>
Postdoctoral Researcher, Flash Center for Computational Science<br>
University of Chicago, Department of Astronomy and Astrophysics<br>
<br>
On Sat, Dec 31, 2016 at 12:06 AM, chandra sekhar Shukla <<br>
<a href="mailto:chandrasekhar.shukla@gmail.com">chandrasekhar.shukla@gmail.com</a><wbr>> wrote:<br>
<br>
> Hi everyone & happy new year,<br>
><br>
> Firstly I am using the setup script, as detailed in the user guide:<br>
><br>
> ./setup -auto LaserSlab -2d -nxb=16 -nyb=16 +hdf5typeio \<br>
>> species=cham,targ +mtmmmt +laser +uhd3t +mgd mgd_meshgroups=6 \<br>
>> -parfile=example.par<br>
><br>
><br>
> I am running into this error:<br>
><br>
> io_h5file_interface.o: In function `io_h5init_file_':<br>
> /home/chandra/Downloads/<wbr>FLASH4.4/object/io_h5file_<wbr>interface.c:165:<br>
> undefined reference to `H5Pset_fapl_mpio'<br>
> io_h5file_interface.o: In function `io_h5open_file_for_read_':<br>
> /home/chandra/Downloads/<wbr>FLASH4.4/object/io_h5file_<wbr>interface.c:273:<br>
> undefined reference to `H5Pset_fapl_mpio'<br>
> io_h5read_unknowns.o: In function `io_h5read_unknowns_':<br>
> /home/chandra/Downloads/<wbr>FLASH4.4/object/io_h5read_<wbr>unknowns.c:53:<br>
> undefined reference to `H5Pset_dxpl_mpio'<br>
> io_h5write_unknowns.o: In function `io_h5write_unknowns_':<br>
> /home/chandra/Downloads/<wbr>FLASH4.4/object/io_h5write_<wbr>unknowns.c:156:<br>
> undefined reference to `H5Pset_dxpl_mpio'<br>
> io_h5write_unknowns_sp.o: In function `io_h5write_unknowns_sp_':<br>
> /home/chandra/Downloads/<wbr>FLASH4.4/object/io_h5write_<wbr>unknowns_sp.c:237:<br>
> undefined reference to `H5Pset_dxpl_mpio'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(par_gsmg.o): In function<br>
> `hypre_BoomerAMGFitVectors':<br>
> par_gsmg.c:(.text+0x1d9d): undefined reference to `hypre_dgels'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(par_relax.o): In function<br>
> `hypre_BoomerAMGRelax':<br>
> par_relax.c:(.text+0xf6d5): undefined reference to `hypre_dgetrf'<br>
> par_relax.c:(.text+0xf725): undefined reference to `hypre_dgetrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function `hypre_<br>
> AMGNodalSchwarzSmoother':<br>
> schwarz.c:(.text+0xc00): undefined reference to `hypre_dpotrf'<br>
> schwarz.c:(.text+0xe9e): undefined reference to `hypre_dpotrf'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_ParMPSchwarzSolve':<br>
> schwarz.c:(.text+0x1e30): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x1e8c): undefined reference to `hypre_dpotrs'<br>
> schwarz.c:(.text+0x25be): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x261a): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_MPSchwarzSolve':<br>
> schwarz.c:(.text+0x2e34): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x2e84): undefined reference to `hypre_dpotrs'<br>
> schwarz.c:(.text+0x31d6): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x3226): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_MPSchwarzCFSolve':<br>
> schwarz.c:(.text+0x372b): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x377b): undefined reference to `hypre_dpotrs'<br>
> schwarz.c:(.text+0x3b21): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x3b71): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_MPSchwarzFWSolve':<br>
> schwarz.c:(.text+0x4015): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x4065): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_MPSchwarzCFFWSolve':<br>
> schwarz.c:(.text+0x457e): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x45ce): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_AMGCreateDomainDof':<br>
> schwarz.c:(.text+0x63a5): undefined reference to `hypre_dgetrf'<br>
> schwarz.c:(.text+0x63de): undefined reference to `hypre_dpotrf'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_AdSchwarzSolve':<br>
> schwarz.c:(.text+0x88cb): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x8912): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_AdSchwarzCFSolve':<br>
> schwarz.c:(.text+0x8d0f): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x8d56): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_ParAdSchwarzSolve':<br>
> schwarz.c:(.text+0x965a): undefined reference to `hypre_dgetrs'<br>
> schwarz.c:(.text+0x96b6): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(schwarz.o): In function<br>
> `hypre_ParAMGCreateDomainDof':<br>
> schwarz.c:(.text+0xbd47): undefined reference to `hypre_dgetrf'<br>
> schwarz.c:(.text+0xbd80): undefined reference to `hypre_dpotrf'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(ParaSails.o): In function<br>
> `ComputeValuesSym':<br>
> ParaSails.c:(.text+0x211b): undefined reference to `hypre_dpotrf'<br>
> ParaSails.c:(.text+0x2176): undefined reference to `hypre_dpotrs'<br>
> /usr/local/hypre/lib/libHYPRE.<wbr>a(ParaSails.o): In function<br>
> `ComputeValuesNonsym':<br>
> ParaSails.c:(.text+0x2973): undefined reference to `hypre_dgels'<br>
> collect2: error: ld returned 1 exit status<br>
> make: *** [flash4] Error 1<br>
> chandra@chandra-Inspiron-3558:<wbr>~/Downloads/FLASH4.4/object$<br>
> Does anyone help me to getting the soulation of this?<br>
><br>
> thanks in advance.<br>
><br>
> With Warm Regards,<br>
><br>
> CHANDRASEKHAR SHUKLA<br>
> INSTITUTE FOR PLASMA RESEARCH<br>
> GANDHINAGAR,GUJRAT, INDIA<br>
><br>
><br>
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</blockquote></div><br><br clear="all"><br>-- <br><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>D. P. S. L. Kameswari,<br>Ph. D(Physics)</div><div>ACRHEM<br>University Of Hyderabad,<br>Hyderabad,<br>e-mail:<a href="mailto:id%3Aphanisri123@gmail.com" target="_blank">phanisri123@gmail.com</a><br></div></div></div></div></div></div></div>
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