<div dir="ltr"><br><div class="gmail_extra"><br><div class="gmail_quote">On Sat, Jan 28, 2017 at 6:47 PM, Rahul Kashyap <span dir="ltr"><<a href="mailto:rkashyap@umassd.edu" target="_blank">rkashyap@umassd.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><div><div>Hi Nathan, <br><br></div>Thanks. I think that was the problem. I was annotating grids. I have yt 3.3.2; most recent is 3.3.3. <br></div><br>Is it possible to do so now for cylindrical grids? It might be required for my analysis at some point so, may be you could point me towards tweaking yt to get it working. <br></div></div></blockquote><div><br></div><div>That makes sense, thanks for the extra information.</div><div><br></div><div>The annotate_grids function corresponds to the GridBoundaryCallback, defined here:</div><div><br></div><div><a href="https://bitbucket.org/yt_analysis/yt/src/23d0e83400c92b26416052a26d89444bdd1de9ed/yt/visualization/plot_modifications.py?at=yt&fileviewer=file-view-default#plot_modifications.py-562">https://bitbucket.org/yt_analysis/yt/src/23d0e83400c92b26416052a26d89444bdd1de9ed/yt/visualization/plot_modifications.py?at=yt&fileviewer=file-view-default#plot_modifications.py-562</a><br></div><div><br></div><div>Indeed, it does not yet support non-cartesian geometries.</div><div><br></div><div>If you look at the __call__ function of this class, you can see how it actually does the work of drawing the grid boundaries on the plot. Most of the code in that function deals with periodic boundary conditions, but if you look a little bit further you can see that right now it draws the grid boundaries assuming that they appear to be regular polygons using a matplotlib PolyCollection (see around line 670).</div><div><br></div><div>For curvilinear grids this assumption will need to be relaxed.</div><div><br></div><div>Rather than continuing to use PolyCollection, it might be beneficial to to look at the CellEdgesCallback, defined in the same file. This callback (which is used to draw lines at the edges of individual cells in a simulation) delegates the job of drawing the boundaries to the pixelization routine (the cython routine that does the hard work of actually drawing the pixelized representation of your AMR data). I suspect that will be a better approach going forward, since we will be able to support curvilinear geometries without having to figure out explicitly how to draw the grid boundaries using matplotlib primitives. That said, right now the `CellEdgesCallback` also only supports cartesian geometries because no one has updated the pixelizer for cylindrical geometries to draw cell or grid boundaries.</div><div><br></div><div>For cylindrical geometries, the pixelizer is defined here:</div><div><br></div><div><a href="https://bitbucket.org/yt_analysis/yt/src/23d0e83400c92b26416052a26d89444bdd1de9ed/yt/utilities/lib/pixelization_routines.pyx?at=yt&fileviewer=file-view-default#pixelization_routines.pyx-321">https://bitbucket.org/yt_analysis/yt/src/23d0e83400c92b26416052a26d89444bdd1de9ed/yt/utilities/lib/pixelization_routines.pyx?at=yt&fileviewer=file-view-default#pixelization_routines.pyx-321</a><br></div><div><br></div><div>This is written in cython, which is a python-like language that compiles to C and is used heavily in yt for performance critical tasks.</div><div><br></div><div>Hopefully that wasn't information overload. Obviously making is so the GridBoundariesCallback functions correctly for curvilinear geometries is something we will get around to eventually. Like most things in an open source project, we are limited by manpower and time. If you (or anyone else reading this) would like to contribute this feature that would be extremely appreciated. If you have any questions about how to contribute I'm very happy to help out.</div><div><br></div><div>That said, if you feel like that is too much, that is also ok. We will get around to adding support for this, and improving support for curvilinear geometries is definitely on our roadmap.</div><div><br></div><div>Sorry to not have an easy solution here, I hope my answer was helpful at some level.</div><div><br></div><div>-Nathan</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><br></div><div>Best,<br></div>-Rahul<br><div><div><div><br><br>%matplotlib inline<br>import yt<br><br>path='super3d_hdf5_chk_0000'<br>ds = yt.load(path)<br><br>s = yt.SlicePlot(ds, "r", ["density","temperature"], center=[0,0,0])<br>s.zoom(20.0)<br>#s.annotate_grids()<br>s.show()<br>s.save('temp_data/')<br>#"""<br></div></div></div></div><div class="gmail_extra"><br><div class="gmail_quote"><span>On Sat, Jan 28, 2017 at 7:10 PM, Nathan Goldbaum <span dir="ltr"><<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>></span> wrote:<br></span><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><span><div dir="ltr">Hi Rahul,<div><br></div><div>I'm not able to reproduce the behavior you're seeing. The particular error you showed indicates that you are using some of the plot annotation functions that are attached to yt plot objects. Not all of these annotation functions support curvilinear geometries. Note that in principle many of these *could* be implemented, that just hasn't happened yet. Unfortunately the error doesn't say which of these functions is triggering the issue, so I can't tell that myself based on the information you've given.</div><div><br></div><div>Is there any chance you can share a minimal working example that demonstrates the issue you're having?</div><span class="gmail-m_935452331162426372m_-7544449691492644310HOEnZb"><font color="#888888"><div><br></div><div>-Nathan</div></font></span></div></span><div><div class="gmail-m_935452331162426372h5"><div class="gmail-m_935452331162426372m_-7544449691492644310HOEnZb"><div class="gmail-m_935452331162426372m_-7544449691492644310h5"><div class="gmail_extra"><br><div class="gmail_quote">On Sat, Jan 28, 2017 at 6:00 PM, Rahul Kashyap <span dir="ltr"><<a href="mailto:rkashyap@umassd.edu" target="_blank">rkashyap@umassd.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><div><div>Hi John,<br><br></div>Thanks. Below is the error along with the call back. I'm using SlicePlot function here. <br><br>s = yt.SlicePlot(ds, "z", ["density","temperature", "velocity_magnitude","pressure<wbr>"], center="max")<br><br></div>It gives me grid informations but, perhaps treats it as cartesian. The angles are in radians. <br>I have provided link to a small FLASH file where data is trivial -- <a href="https://www.dropbox.com/s/4e01kp3fsd6e3fh/super3d_hdf5_chk_0000?dl=0" target="_blank">https://www.dropbox.com/s/4e01<wbr>kp3fsd6e3fh/super3d_hdf5_chk_0<wbr>000?dl=0</a><br><br></div><div>Appreciated,<br></div>-Rahul <br><div><div><br><pre><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired">------------------------------<wbr>------------------------------<wbr>---------------</span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired">YTDataTypeUnsupported</span> Traceback (most recent call last)
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"><ipython-input-9-5ab982893667></span> in <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansicyan"><module><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">()</span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 102</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired"># weight_field = ("CellMass")).save()</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 103</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired">#s.show()</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">--> 104<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired"> </span>s<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">.</span>save<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">'temp_data/'</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">)</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 105</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired">#"""</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 106</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">/home/rkashyap/sw/miniconda2/l<wbr>ib/python2.7/site-packages/yt/<wbr>visualization/plot_container.p<wbr>yc</span> in <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansicyan">newfunc<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(*args, **kwargs)</span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 76</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired"># it is the responsibility of _setup_plots to</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 77</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired"># call args[0].run_callbacks()</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">---> 78<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired"> </span>args<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">[</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansicyan">0</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">]</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">.</span>_setup_plots<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">)</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 79</span> rv <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">=</span> f<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">*</span>args<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">,</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">**</span>kwargs<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">)</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 80</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">return</span> rv<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">/home/rkashyap/sw/miniconda2/l<wbr>ib/python2.7/site-packages/yt/<wbr>visualization/plot_window.pyc</span> in <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansicyan">_setup_plots<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(self)</span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 954</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 955</span> self<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">.</span>_set_font_properties<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">)</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">--> 956<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired"> </span>self<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">.</span>run_callbacks<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">)</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 957</span> self<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">.</span>_plot_valid <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">=</span> True<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 958</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">/home/rkashyap/sw/miniconda2/l<wbr>ib/python2.7/site-packages/yt/<wbr>visualization/plot_window.pyc</span> in <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansicyan">run_callbacks<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(self)</span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 1007</span> callback<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(</span>cbw<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">)</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 1008</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">except</span> YTDataTypeUnsupported <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">as</span> e<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">:</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">-> 1009<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired"> </span>six<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">.</span>reraise<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(</span>YTDataTypeUnsuppor<wbr>ted<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">,</span> e<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">)</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 1010</span> <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">except</span> Exception <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">as</span> e<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">:</span><span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue"></span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen"> 1011</span> six.reraise(YTPlotCallbackErro<wbr>r,
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansigreen">/home/rkashyap/sw/miniconda2/l<wbr>ib/python2.7/site-packages/six<wbr>.pyc</span> in <span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansicyan">reraise<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansiblue">(tp, value, tb)</span>
<span class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475gmail-m_1158771848956569332gmail-ansired">YTDataTypeUnsupported</span>: This operation is not supported for data of geometry cylindrical; It supports data of geometries ('cartesian', 'spectral_cube')</span></span></span></span></span></span></span></span></span></pre><br></div></div></div><div class="gmail_extra"><br><div class="gmail_quote"><span>On Sat, Jan 28, 2017 at 6:18 PM, John ZuHone <span dir="ltr"><<a href="mailto:jzuhone@gmail.com" target="_blank">jzuhone@gmail.com</a>></span> wrote:<br></span><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="auto"><span><div>Hi Rahul,</div><div id="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475m_8852919704698477912AppleMailSignature"><br></div><div id="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475m_8852919704698477912AppleMailSignature">Could you detail exactly what the issue with yt was? We'd like to help out.</div><div id="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475m_8852919704698477912AppleMailSignature"><br></div><div id="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475m_8852919704698477912AppleMailSignature">John </div><div id="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475m_8852919704698477912AppleMailSignature"><br>Sent from my iPhone</div></span><div><div class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107m_4658169295806268475h5"><span><div><br>On Jan 28, 2017, at 3:12 PM, Rahul Kashyap <<a href="mailto:rkashyap@umassd.edu" target="_blank">rkashyap@umassd.edu</a>> wrote:<br><br></div></span><div><div class="gmail-m_935452331162426372m_-7544449691492644310m_6079277722815669107h5"><blockquote type="cite"><div><div dir="ltr"><div><div><div>Dear FLASH users,<br><br></div>Has anyone come up with visualizing 3D cylindrical data set by FLASH? <br><br>I tried VisIt by transforming coordinate from cylindrical to cartesian. This sets up the grid with z-coordinate from 0 to 6.28 i.e. 2*pi i.e. does not consider it as angle. <br></div>It might be that it's due to the order of coordinates used by visit which is <span><span style="font-style:italic">r,θ,z</span></span> as opposed to <span><span style="font-style:italic">r,z,θ</span></span> in FLASH. <br>yt has also not worked. <br><br></div><div>Any help is highly appreciated.<br></div><div><br></div><div>Thanks,<br></div>-Rahul<br></div>
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