<div dir="ltr">Hi Peter,<div><br></div><div> it might be because you haven't flagged HDF5 to use the version 1.6 setup. In my Makefile.h I add DH5_USE_16_API to the following definitions:</div><div> F90FLAGS</div><div> CFLAGS_HDF5</div><div> </div><div>Perhaps that will solve your problem,</div><div> -Mark</div>
</div><div class="gmail_extra"><br><div class="gmail_quote">On 10 October 2017 at 10:33, Peter Woitke <span dir="ltr"><<a href="mailto:pw31@st-andrews.ac.uk" target="_blank">pw31@st-andrews.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi there,<br>
<br>
I just downloaded and compiled mpich, hdf5 and flash, and I am getting run-time error ...<br>
<br>
HDF5-DIAG: Error detected in HDF5 (1.10.1) MPI-process 0:<br>
#000: H5Ddeprec.c line 128 in H5Dcreate1(): not a location ID<br>
major: Invalid arguments to routine<br>
minor: Inappropriate type<br>
#001: H5Gloc.c line 251 in H5G_loc(): invalid object ID<br>
major: Invalid arguments to routine<br>
minor: Bad value<br>
flash4: io_h5create_dataset.c:57: io_h5create_dataset: Assertion `dataset <br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
= 0'<br>
</blockquote>
<br>
I have tested my mpich and hdf5 installations and they have passed all tests. I am listing my installation commands below. Maybe "enable-parallel" is not a good idea? My runSedov directory has<br>
ugo+rw permissions.<br>
<br>
I read in another FLASH-USER entry that one should try<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
./setup -auto Sedov +ug<br>
</blockquote>
<br>
This results in another run-time error ...<br>
<br>
[Driver_init] Must set runtime parameters iProcs, jProcs, kProcs, and meshCopyCount so that iProcs*jProcs*kProcs*meshCopyC<wbr>ount equals number of processors<br>
Calling MPI_Abort() for immediate shutdown!<br>
<br>
Thank you for your help,<br>
<br>
Peter Woitke<br>
<br>
<br>
------------------------------<wbr>----------------------------<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
cd ~/software/hdf5-1.10.1<br>
setenv CC mpicc<br>
setenv CXX mpicxx<br>
setenv FC mpif90<br>
./configure --help<br>
./configure --prefix=/home/star/pw31/softw<wbr>are/hdf5<br>
</blockquote>
--enable-fortran --enable-parallel<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
make<br>
make check<br>
make install<br>
make check-install<br>
</blockquote>
add /home/star/pw31/software/hdf5/<wbr>lib to LD_LIBRARY_PATH ------------------------------<wbr>----------------------------<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
cd ~/flash4.4/sites<br>
mkdir prodimo<br>
cp Prototypes/Linux/<a href="http://Makefile.h.in">Makefile.h.in</a><wbr>tel prodimo/Makefile.h<br>
cd prodimo<br>
emacs Makefile.h ...<br>
cd ~/flash4.4<br>
./setup -auto Sedov cd object<br>
make<br>
</blockquote>
SUCCESS<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
mkdir ../runSedov<br>
cd ../runSedov<br>
cp ../source/Simulation/Simulatio<wbr>nMain/SedovChamber/flash.par .<br>
mpirun -np 7 ../object/flash4<br>
</blockquote>
------------------------------<wbr>----------------------------<br>
<br>
<br>
<br>
Dr. Peter Woitke<br>
St Andrews University<br>
School of Physics & Astronomy<br>
top floor, room 306<br>
North Haugh<br>
KY16 9SS<br>
St Andrews, UK<br>
Tel: <a href="tel:%28%2B44%29%201334%2046%201681" value="+441334461681" target="_blank">(+44) 1334 46 1681</a><br>
Fax: <a href="tel:%28%2B44%29%201334%2046%203104" value="+441334463104" target="_blank">(+44) 1334 46 3104</a><br>
<br>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><br><span style="font-size:12.8px">Mark Richardson</span><br style="font-size:12.8px"><div style="font-size:small"><span style="font-size:12.8px">MAT Postdoctoral Fellow</span><div style="font-size:12.8px">Department of Astrophysics</div><div><span style="font-size:12.8px">American Museum of Natural History</span><div style="font-size:12.8px"><a href="mailto:Mark.Richardson.Work@gmail.com" style="color:rgb(17,85,204)" target="_blank">Mark.Richardson.Work@gmail.com</a></div><div><a href="https://sites.google.com/site/marklarichardson/" style="color:rgb(17,85,204)" target="_blank">My Website</a><br><div style="font-size:12.8px">212 496 3432</div></div></div></div></div></div></div></div></div></div></div></div></div>
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