<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><meta http-equiv="Content-Type" content="text/html; charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><meta http-equiv="Content-Type" content="text/html; charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Dear Klaus,<div class=""><br class=""></div><div class="">thank you very much for the patch, which allowed to reach the end of the compilation.</div><div class="">However now, when I run the code, I get the following error, at the moment of outputting the first hdf5 file:</div><div class=""><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgba(0, 84, 147, 0.819608);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">flash4: symbol lookup error: flash4: undefined symbol: H5Pset_fapl_mpio</span></div><div class=""><br class="webkit-block-placeholder"></div><div class="">Best regards,</div><div class="">Mattia</div><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><div class=""><br class="Apple-interchange-newline">························································</div> Dr <b class="">Mattia Cipriani,</b> PhD<br class=""> FSN-FUSPHY-SAD<br class=""> ENEA Centro Ricerche Frascati<br class=""><div class=""> 45, Via E. Fermi<br class=""> 00044 Frascati (Rome)<br class=""> Italy</div><div class=""> Ufficio: Edificio 12<div style="line-height: normal;" class=""> Stanza 12029</div> Tel. +39 069400 5145 <br class=""> mobile +39 328 5552077<br class="">························································</div></div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><br class=""></div></div></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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<div class=""><br class=""><blockquote type="cite" class=""><div class="">Il giorno 08 mar 2019, alle ore 21:46, Klaus Weide <<a href="mailto:klaus@flash.uchicago.edu" class="">klaus@flash.uchicago.edu</a>> ha scritto:</div><br class="Apple-interchange-newline"><div class=""><div class="">On Wed, 6 Mar 2019, Mattia Cipriani wrote:<br class=""><br class=""><blockquote type="cite" class="">Dear FLASH Users,<br class=""><br class="">I am compiling FLASH4.5 code by using OpenMPI 3.1.2 and HDF5 1.10.5, to take advantage of OpenMPI for parallel data output.<br class="">I have the following issue:<br class=""><br class="">/usr/mpi/gcc730/openmpi-3.1.2/bin/mpicc -I/afs/<a href="http://enea.it/project/iner/SIMULAZIONI/software/build/hdf5/include" class="">enea.it/project/iner/SIMULAZIONI/software/build/hdf5/include</a> -DH5_USE_16_API -I/afs/<a href="http://enea.it/project/iner/SIMULAZIONI/software/build/hypre/include" class="">enea.it/project/iner/SIMULAZIONI/software/build/hypre/include</a> -ggdb -c -O2 -Wuninitialized -D_FORTIFY_SOURCE=2 -DFLASH_3T -DMAXBLOCKS=1000 -DNXB=16 -DNYB=16 -DNZB=1 -DN_DIM=2 io_h5_report_xfer_method.c<br class="">io_h5_report_xfer_method.c: In function ‘io_h5_report_xfer_method’:<br class="">io_h5_report_xfer_method.c:105:26: error: ‘H5D_MPIO_FILTERS’ undeclared (first use in this function)<br class=""> if (global_cause & H5D_MPIO_FILTERS) {<br class=""> ^<br class="">io_h5_report_xfer_method.c:105:26: note: each undeclared identifier is reported only once for each function it appears in<br class="">make: *** [io_h5_report_xfer_method.o] Error 1<br class=""></blockquote><br class=""><br class="">To avoid this problem, apply the attached patch to the file<br class=""><br class=""> source/IO/IOMain/hdf5/io_h5_report_xfer_method.c<br class=""><br class=""><br class="">Klaus<span id="cid:Pine.LNX.4.64.1903081446250.18784@flash.uchicago.edu" class=""><hdf5_1_10_addtl.diff></span></div></div></blockquote></div><br class=""></div></div></div></body></html>