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<p>Hi Marissa,</p>
<p>Thanks for the help, it's now running. <br>
</p>
<p>I noticed this page in the manual previously, since it noted that
it tracked the average ionization and average atomic number only.
I was hoping that there would be a quick change to the input file
that allowed the output of each ion species within 1 material,
since the IONMIX file has a relative abundance of each ion
species, they must be being computed but maybe not output. I will
continue to look into this. <br>
</p>
<p>All the best,</p>
<p>Aodhan<br>
</p>
<div class="moz-cite-prefix">On 13/02/2020 01:16, Marissa Adams
wrote:<br>
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<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Wed, Feb 12, 2020 at
12:30 AM Aodhan McIlvenny <<a
href="mailto:amcilvenny01@qub.ac.uk"
moz-do-not-send="true">amcilvenny01@qub.ac.uk</a>>
wrote:<br>
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<div>
<p>Hi all,</p>
<p>I have 2 questions which I hope are easy to answer; I
am a bit stuck when trying to change the material in
the laserslab example.
<br>
</p>
<ul>
<li>I am trying to use the polystyrene ionmix4 file
which is in the same format as the aluminium one
however it returns an error that it can't be found.
Any ideas why this is so?<br>
</li>
</ul>
</div>
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<div>Where are you running the executable? Perhaps you have
not moved that particular file to the directory where you
are running the
<font face="monospace">./flash4</font> executable. If you
are running the executable in the
<i>object</i> directory where you have configured and made
it, then the default Simulation module for the
<i>LaserSlab</i> problem will have not moved that
particular file there. You can change this by editing the
<i>Config</i> file. For instance, I can see that in my
version of the <i>LaserSlab</i> problem, it will only
copy these files to the object directory:<br>
<p class="gmail-p1"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:"Andale
Mono";color:rgb(47,255,18);background-color:rgba(0,0,0,0.9)">
<span class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">DATAFILES
al-imx-002.cn4</span></p>
<p class="gmail-p1"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:"Andale
Mono";color:rgb(47,255,18);background-color:rgba(0,0,0,0.9)">
<span class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">DATAFILES
al-imx-003.cn4</span></p>
<p class="gmail-p1"
style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:14px;line-height:normal;font-family:"Andale
Mono";color:rgb(47,255,18);background-color:rgba(0,0,0,0.9)">
<span class="gmail-s1"
style="font-variant-ligatures:no-common-ligatures">DATAFILES
he-imx-005.cn4</span></p>
</div>
<div>e.g. Tables for aluminum and helium as found in the <i>Config</i>
file in <i>
/source/Simulation/SimulationMain/LaserSlab/</i><br>
</div>
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0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div>
<ul>
<li>Secondly, can I track the carbon and proton
species separately from this one material? Ideally I
would like to return the position and temperature of
carbon and protons separately. Is there a partciular
syntax for looking at each ion species from 1
material?</li>
</ul>
</div>
</blockquote>
<div>In order to track the in particular just the *carbon*
elements of a plastic material such as CH, that will
require your own scientific inquiry; from my
naive experience, I've never heard of someone doing that
in a Eulerian fluid code but I am sure I one can google it
if it's been done. However, if you want to do standardized
extractions of the species you're using as materials in
FLASH, as well as acquire information such as the electron
and ion densities, make sure you're using 3T and take a
gander at page 539/section 34.7 of the user manual. </div>
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<ul>
</ul>
<p>I have attached my .par file. I would much appreciate
some help! I am using FLASH.4.6.2 and setup command
was
<br>
</p>
<p>./setup -auto LaserSlab -2d +cylindrical -nxb=16
-nyb=16 +hdf5typeio species=cham,targ +mtmmmt +laser
+uhd3t +mgd mgd_meshgroups=6 -parfile=VulcanTest2.par<br>
</p>
<p>Thanks in advance,</p>
<p>Aodhan<br>
</p>
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Best,<br>
Marissa<br clear="all">
<div><br>
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-- <br>
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<div dir="ltr"><font size="1"
face="monospace" color="#000000">%---------------------------------------------%</font>
<div><font size="1" face="monospace"
color="#000000">Marissa B. P.
Adams</font></div>
<div><font size="1" face="monospace"
color="#000000">(she/her/hers)</font></div>
<div><font size="1" face="monospace"
color="#000000">Phd Candidate,
University of Rochester</font></div>
<div><font size="1" face="monospace"
color="#000000">NDVS, University
of Chicago</font></div>
<div><font size="1" face="monospace"
color="#000000"><b>E-mail:</b> <a
href="mailto:marissa@flash.uchicago.edu" style="color:rgb(17,85,204)"
target="_blank"
moz-do-not-send="true">marissa@flash.uchicago.edu</a></font></div>
<div><font size="1" face="monospace"
color="#000000"><b>Website:</b> <a
href="http://www.pas.rochester.edu/~madams" style="color:rgb(17,85,204)"
target="_blank"
moz-do-not-send="true">https://www.pas.rochester.edu/~madams</a></font></div>
<div><font size="1" face="monospace"
color="#000000"><b>Twitter:</b> <a
href="https://twitter.com/mbpadams" style="color:rgb(17,85,204)"
target="_blank"
moz-do-not-send="true">https://twitter.com/mbpadams</a></font></div>
<div><font size="1" face="monospace"
color="#000000"><b>Current
Location:</b></font></div>
<div><font size="1" face="monospace"
color="#000000">553 ERC</font></div>
<div><font size="1" face="monospace"
color="#000000">Flash Center for
Computational Science</font></div>
<div><span
style="color:rgb(0,0,0);font-family:monospace;font-size:x-small">5640
S. Ellis Ave, ERC 553</span></div>
<div><span
style="color:rgb(0,0,0);font-family:monospace;font-size:x-small">Chicago,
IL 60637</span></div>
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