<meta http-equiv="Content-Type" content="text/html; charset=utf-8"><div dir="ltr"><div dir="ltr">Hi Kelin,</div><div dir="ltr"><br></div><div>Instead of calling the third species, <font face="monospace">TARG2</font>, try calling it another name, like <font face="monospace">WIND</font> for "window" for instance. Species can only have names that are four letters long. Try that and see if the bug persists.<br><br>Best,<br>Marissa</div><div><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Apr 6, 2020 at 4:13 PM Kelin KO <<a href="mailto:kkurzero@gmail.com">kkurzero@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)">Hi all,</div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><br></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)">I am a novice FLASH user and am trying to construct a composite target from the default LaserSlab problem. My configuration is a thin aluminum layer sandwiched between two polystyrene layers. Initially, I modified the if statements in initblock to define 4 regions (chamber, 1st/2nd/3rd target layer) and modified the other init files as well as Config and .par to reflect this. I only used the two species defined in the default LaserSlab problem, using CHAM_SPEC (helium) for the middle target layer, just to establish that I changed the geometry correctly). This compiles and runs as expected. </div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><br></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)">However, when I tried to define a third species, it compiled but gave a strange error at runtime that I'm struggling to find the cause of (see attached .Log file):<span style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline;color:inherit"></span></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><span style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline;color:inherit"><br></span></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><span style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline;color:inherit"><span style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">HDF5-DIAG: Error detected in HDF5 (1.8.17) MPI-process 0:<br></span><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> #000: H5Ddeprec.c line 193 in H5Dcreate1(): unable to create dataset<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> major: Dataset<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> minor: Unable to initialize object<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> #001: H5Dint.c line 455 in H5D__create_named(): unable to create and link to dataset<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> major: Dataset<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> minor: Unable to initialize object<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> #002: H5L.c line 1638 in H5L_link_object(): unable to create new link to object<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> major: Links<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> minor: Unable to initialize object<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> #003: H5L.c line 1882 in H5L_create_real(): can't insert link<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> major: Symbol table<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> minor: Unable to insert object<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> #004: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> major: Symbol table<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> minor: Object not found<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> #005: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> major: Symbol table<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> minor: Callback failed<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> #006: H5L.c line 1674 in H5L_link_cb(): name already exists<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> major: Symbol table<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"> minor: Object already exists<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4: io_h5create_dataset.c:61: io_h5create_dataset: Assertion `dataset >= 0' failed.<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">forrtl: error (76): Abort trap signal<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">Image PC Routine Line Source <br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000B50CC1 tbk_trace_stack_i Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000B4EDFB tbk_string_stack_ Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000AFE444 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000AFE256 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000AA7569 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000AAB374 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">libpthread-2.17.s 00002B9C6787E5D0 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__libc-2D2.17.so&d=DwMFaQ&c=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU&r=wlIj2Wk5AYR_utqRRqN2OpI1nykd7sy-UZesSWABUiw&m=g6majbT8WMLt7mVKPDafFL0xsMf-8SY6y2gfx4NveiE&s=TxgKhO5lmnLQWGLmi0hnzN2MnvSitj0lFQPwQG38GpU&e=" target="_blank">libc-2.17.so</a> 00002B9C67DC3207 gsignal Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__libc-2D2.17.so&d=DwMFaQ&c=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU&r=wlIj2Wk5AYR_utqRRqN2OpI1nykd7sy-UZesSWABUiw&m=g6majbT8WMLt7mVKPDafFL0xsMf-8SY6y2gfx4NveiE&s=TxgKhO5lmnLQWGLmi0hnzN2MnvSitj0lFQPwQG38GpU&e=" target="_blank">libc-2.17.so</a> 00002B9C67DC48F8 abort Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__libc-2D2.17.so&d=DwMFaQ&c=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU&r=wlIj2Wk5AYR_utqRRqN2OpI1nykd7sy-UZesSWABUiw&m=g6majbT8WMLt7mVKPDafFL0xsMf-8SY6y2gfx4NveiE&s=TxgKhO5lmnLQWGLmi0hnzN2MnvSitj0lFQPwQG38GpU&e=" target="_blank">libc-2.17.so</a> 00002B9C67DBC026 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__libc-2D2.17.so&d=DwMFaQ&c=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU&r=wlIj2Wk5AYR_utqRRqN2OpI1nykd7sy-UZesSWABUiw&m=g6majbT8WMLt7mVKPDafFL0xsMf-8SY6y2gfx4NveiE&s=TxgKhO5lmnLQWGLmi0hnzN2MnvSitj0lFQPwQG38GpU&e=" target="_blank">libc-2.17.so</a> 00002B9C67DBC0D2 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000671D09 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 000000000066A53A Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 000000000066A995 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 000000000067A45C Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 000000000047F1D8 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 000000000047EAA1 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 0000000000416A21 Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 000000000043CD5E Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 000000000040839E Unknown Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__libc-2D2.17.so&d=DwMFaQ&c=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU&r=wlIj2Wk5AYR_utqRRqN2OpI1nykd7sy-UZesSWABUiw&m=g6majbT8WMLt7mVKPDafFL0xsMf-8SY6y2gfx4NveiE&s=TxgKhO5lmnLQWGLmi0hnzN2MnvSitj0lFQPwQG38GpU&e=" target="_blank">libc-2.17.so</a> 00002B9C67DAF3D5 __libc_start_main Unknown Unknown<br></div><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">flash4 00000000004082A9 Unknown Unknown Unknown<br></div><span style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">/var/spool/slurm/job13017474/slurm_script: line 22: 23813 Aborted ./flash4</span><br></span></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><span style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline;color:inherit"><span style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><br></span></span></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><span style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline;color:inherit"><span style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><br></span></span></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><span style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline;color:inherit"><span style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit">All I have changed from the last working configuration is that I added a TARG2_SPEC to the initblock file (and used it in the if statement), defined all the necessary variables for "targ2" in the init/Config/par files by copying those for the "targ" species and renaming, and changed my ./setup line to reflect the new species (changed -species=targ,cham to -species=cham,targ,targ2). The log file created by flash.par does not mention any errors, it just ends after the creation of the first checkpoint.<br></span></span></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><br></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)">Does anyone have some insight as to where I can begin looking to debug this? I have gone through all the files I changed using the compare plugin in notepad++ and verified that the only changes are the addition of the new variables and that they are syntactically correct, and as I said the executable compiles without issue, so I don't think that's where the problem is.</div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><br></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)">Thanks so much for any guidance you can provide and for your time.</div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><br></div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)">Best,</div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)">Kelin Kurzer-Ogul</div><div style="margin:0px;padding:0px;border:0px;font-variant-numeric:inherit;font-variant-east-asian:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;font-family:Calibri,Arial,Helvetica,sans-serif;vertical-align:baseline;color:rgb(0,0,0)"><div style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><div style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline"><br></div><div id="gmail-m_-1348378689104610356gmail-x_Signature" style="margin:0px;padding:0px;border:0px;font:inherit;vertical-align:baseline;color:inherit"><div style="margin:0px;padding:0px;border:0px;font-style:inherit;font-variant:inherit;font-weight:inherit;font-stretch:inherit;font-size:12pt;line-height:inherit;vertical-align:baseline"><pre style="white-space:pre-wrap">---------------------------
Kelin Kurzer-Ogul
Graduate Student
Department of Mechanical Engineering
University of Rochester</pre></div></div></div></div></div>
</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><font face="monospace" size="1" color="#000000">%---------------------------------------------%</font><div><font face="monospace" size="1" color="#000000">Marissa B. P. Adams</font></div><div><font face="monospace" size="1" color="#000000">(she/her/hers)</font></div><div><font face="monospace" size="1" color="#000000">Phd Candidate, University of Rochester</font></div><div><b style="color:rgb(0,0,0);font-family:monospace;font-size:x-small">E-mail:</b><span style="color:rgb(0,0,0);font-family:monospace;font-size:x-small"> <a href="mailto:madams@pas.rochester.edu" target="_blank">madams@pas.rochester.edu</a></span><br></div><div><font face="monospace" size="1" color="#000000"><b>Website:</b> <a href="http://www.pas.rochester.edu/~madams" target="_blank">https://www.pas.rochester.edu/~madams</a></font></div><div><font face="monospace" color="#000000" size="1"><b>Twitter:</b> <a href="https://twitter.com/mbpadams" target="_blank">https://twitter.com/mbpadams</a></font></div><div><font color="#000000" face="monospace" size="1"><b>Current Location:</b></font></div><div><font color="#000000" face="monospace" size="1">371 Bausch and Lomb Hall</font></div><div><font color="#000000" face="monospace" size="1">University of Rochester</font></div><div><font color="#000000" face="monospace" size="1">Rochester, NY 14627</font></div></div></div></div></div></div></div></div>