<meta http-equiv="Content-Type" content="text/html; charset=utf-8"><div dir="ltr">Hi Carla,<div><br></div><div>I would recommend using an older version of HDF5. Since you're using an older version of FLASH and a very recent release of HDF5, I would recommend trying to <font face="monospace">make</font> with an earlier version of HDF5 to see if that alleviates the error. You may need to use HDF5 1.6 bindings. Take a look at page 174 / Chapter 9 (IO Unit) of the FLASH user manual on the FLASH Transition. If you're working on a cluster, I would recommend asking cluster support to build an older version of HDF5 for you if necessary. I hope this helps.</div><div><br></div><div>Marissa </div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Oct 5, 2021 at 10:15 AM Carla Nicolin Schoder <<a href="mailto:a01302326@unet.univie.ac.at">a01302326@unet.univie.ac.at</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">Dear FLASH community,<br>
<br>
I hope someone can help me with the following problem.<br>
I work with FLASH 3.2 and for the Sedov problem I get an HDF5 Error.<br>
<br>
my modules:<br>
hdf5/1.10.5, intel-mpi/2019.5, intel/19, parallel-netcdf/1.11.1, ..<br>
<br>
my run:<br>
./setup Sedov -auto<br>
gmake -j 4<br>
mpirun -np 4 ./flash3 --> ERROR:<br>
<br>
the ERROR:<br>
HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 0:<br>
#000: H5Ddeprec.c line 189 in H5Dopen1(): not a location<br>
major: Invalid arguments to routine<br>
minor: Inappropriate type<br>
#001: H5Gloc.c line 246 in H5G_loc(): invalid object ID<br>
major: Invalid arguments to routine<br>
minor: Bad value<br>
flash3: io_h5_attribute.c:49: io_h5_attribute_create: Assertion `dsetID <br>
>= 0' failed.<br>
forrtl: error (76): Abort trap signal<br>
Image PC Routine Line <br>
Source<br>
flash3 00000000005AF86B Unknown Unknown <br>
Unknown<br>
libpthread-2.17.s 00002AD54C3575D0 Unknown Unknown <br>
Unknown<br>
<a href="http://libc-2.17.so" rel="noreferrer" target="_blank">libc-2.17.so</a> 00002AD54C89C207 gsignal Unknown <br>
Unknown<br>
<a href="http://libc-2.17.so" rel="noreferrer" target="_blank">libc-2.17.so</a> 00002AD54C89D8F8 abort Unknown <br>
Unknown<br>
<a href="http://libc-2.17.so" rel="noreferrer" target="_blank">libc-2.17.so</a> 00002AD54C895026 Unknown Unknown <br>
Unknown<br>
<a href="http://libc-2.17.so" rel="noreferrer" target="_blank">libc-2.17.so</a> 00002AD54C8950D2 Unknown Unknown <br>
Unknown<br>
flash3 00000000004CB40D Unknown Unknown <br>
Unknown<br>
flash3 00000000004D1EA1 Unknown Unknown <br>
Unknown<br>
flash3 00000000004E0979 Unknown Unknown <br>
Unknown<br>
flash3 000000000044C208 Unknown Unknown <br>
Unknown<br>
flash3 000000000044BC8F Unknown Unknown <br>
Unknown<br>
flash3 000000000040BC0F Unknown Unknown <br>
Unknown<br>
flash3 00000000004133E9 Unknown Unknown <br>
Unknown<br>
flash3 0000000000605456 Unknown Unknown <br>
Unknown<br>
<a href="http://libc-2.17.so" rel="noreferrer" target="_blank">libc-2.17.so</a> 00002AD54C8883D5 __libc_start_main Unknown <br>
Unknown<br>
flash3 0000000000407CE9 Unknown Unknown <br>
Unknown<br>
<br>
===================================================================================<br>
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES<br>
= RANK 0 PID 4328 RUNNING AT l48<br>
= KILLED BY SIGNAL: 6 (Aborted)<br>
===================================================================================<br>
<br>
<br>
If anyone has an idea, what might causes that error, I would be very <br>
happy if you would help me to solve this error.<br>
<br>
Best, Carla Nicolin Schoder<br>
</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><font face="monospace" size="1" color="#000000">%---------------------------------------------%</font><div><font face="monospace" size="1" color="#000000">Marissa B. P. Adams</font></div><div><font face="monospace" size="1" color="#000000">(she/her/hers)</font></div><div><font face="monospace" size="1" color="#000000">Phd Candidate, University of Rochester</font></div><div><font size="1"><b style="color:rgb(0,0,0);font-family:monospace">E-mail:</b><span style="color:rgb(0,0,0);font-family:monospace"> <a href="mailto:madams@pas.rochester.edu" target="_blank">madams@pas.rochester.edu</a></span><br></font></div><div><font face="monospace" size="1" color="#000000"><b>Website:</b> <a href="http://www.pas.rochester.edu/~madams#" target="_blank">https://www.pas.rochester.edu/~madams</a></font></div><div><font size="1"><b style="color:rgb(0,0,0);font-family:monospace">Current Location:</b><br></font></div><div><font color="#000000" face="monospace" size="1">Occupied Seneca Land</font></div><div><font color="#000000" face="monospace" size="1">471 Bausch and Lomb Hall</font></div><div><font color="#000000" face="monospace" size="1">University of Rochester</font></div><div><font color="#000000" face="monospace" size="1">Rochester, NY 14627</font></div></div></div></div></div></div>