<div dir="ltr"><div dir="ltr"><div>Hi,</div><div><br></div><div>Thanks for a quick reply. Please find attached the log file and the amr_runtime_parametrs.dump from the run which blows up. Please let me know if there are any recommendations.</div><div><br></div><div>I am using a split solver because it was giving more accurate results.<br></div></div><div><br></div><div>Thank you for taking the time to understand my problem setup.</div><div><br></div><div><br></div><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Apr 25, 2023 at 8:48 PM Adam Reyes <<a href="mailto:adam.reyes@rochester.edu">adam.reyes@rochester.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Madhav,<div><br></div><div>That specific error that you shared is more of a warning and just means that the code won't be able to report reliable timing information for the "PFFT_Init". If possible could you share a logfile from the run that blows up? This would provide more information about how your problem is setup and if anything could be recommended. </div><div><br></div><div>Admittedly I don't have much experience with the multigrid solvers, but maybe someone who does could be of more help. Is there a reason that you're using the split solver? The unsplit solver with HYPRE is a bit more used for diffusion.<br><br clear="all"><div><div dir="ltr"><div dir="ltr"><div dir="ltr" style="color:rgb(0,0,0);font-family:Helvetica;font-size:12px">*************************************************************************</div><div dir="ltr" style="color:rgb(0,0,0);font-family:Helvetica;font-size:12px">Adam Reyes<div><img src="https://flash.rochester.edu/site/common/images/email_signature/FLASH.jpg"><br></div><div>Code Group Leader, Flash Center for Computational Science <span> </span><br></div><div>Research Scientist, Dept. of Physics and Astronomy</div><div>University of Rochester</div><div>River Campus: Bausch and Lomb Hall, 369 <span> </span><br></div><div>500 Wilson Blvd. PO Box 270171, Rochester, NY 14627</div><div dir="ltr">Email<span> </span><a href="mailto:adam.reyes@rochester.edu" target="_blank">adam.reyes@rochester.edu</a></div><div>Web<span> </span><a href="https://flash.rochester.edu/" target="_blank">https://flash.rochester.edu</a><br></div><div> (he / him / his)</div><div><img src="https://flash.rochester.edu/site/common/images/email_signature/FLASH-pride-sml.png"><br></div>*************************************************************************</div></div></div></div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Apr 25, 2023 at 5:36 PM Madhav Nagori <<a href="mailto:mnagori@uncc.edu" target="_blank">mnagori@uncc.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Thank you very much for your reply. I have been trying to use the implicit diffusion with AMR, but I am not able to run it. I am getting the following error and then my solution diverges and blows up.<div><br><div><i>perfmon: ran out of space for timer, "PFFT_Init", cannot time this timer with perfmon</i><br></div><div><div><br></div><div>What I did was that I added the multigrid solver (REQUESTS Grid/GridSolvers/Multigrid/PfftTopLevelSolve/) to my Config file and added the corresponding runtime parameters in my <i>.par file</i> according to the FLASH manual. Is there anything else that needs to be added ? Kindly let me know.</div></div><div><br></div><div>P.S: I am using the split solver which means that the time advancement code is solved by Thomas Algorithm. Would this have any connection with this error?</div><div><br></div><div>Thank you for your time.</div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Apr 5, 2023 at 7:09 PM Hansen, Eddie <<a href="mailto:ehansen@pas.rochester.edu" target="_blank">ehansen@pas.rochester.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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The user guide is referring to implicit magnetic diffusion. That one is not yet supported for AMR. Currently, the implicit diffusion solvers with AMR are for thermal conduction and radiation only.
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<div id="m_2646014308130165934m_203276026415775180m_-4182221009917404925m_6074541455504169654ms-outlook-mobile-signature" dir="auto">
<div dir="auto">******************************************</div>
<div dir="auto">Eddie Hansen | Research Scientist</div>
<div dir="auto">Flash Center for Computational Science</div>
<div dir="auto">Dept. of Physics and Astronomy</div>
<div dir="auto">University of Rochester, Rochester, NY</div>
<div dir="auto">Cell 607-341-6126 | <a href="http://flash.rochester.edu" target="_blank">flash.rochester.edu</a></div>
<div dir="auto">(he / him / his)</div>
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<hr style="display:inline-block;width:98%">
<div id="m_2646014308130165934m_203276026415775180m_-4182221009917404925m_6074541455504169654divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> flash-users <<a href="mailto:flash-users-bounces@flash.rochester.edu" target="_blank">flash-users-bounces@flash.rochester.edu</a>> on behalf of Madhav Nagori <<a href="mailto:mnagori@uncc.edu" target="_blank">mnagori@uncc.edu</a>><br>
<b>Sent:</b> Wednesday, April 5, 2023 10:31:48 AM<br>
<b>To:</b> <a href="mailto:flash-users@flash.rochester.edu" target="_blank">flash-users@flash.rochester.edu</a> <<a href="mailto:flash-users@flash.rochester.edu" target="_blank">flash-users@flash.rochester.edu</a>><br>
<b>Subject:</b> [FLASH-USERS] Use of implicit diffusion solver with AMR</font>
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<div dir="ltr">Hello FLASH users and Development Team,
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<div>I want to use the implicit diffusion solver for some very high resolution cases of cell size 512*512*2048. For such high resolution, I want to use AMR as the uniform mesh will take months to run. </div>
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<div>The user guide tells that the paramesh is not available to the implicit diffusion solver. Is it possible to modify the code so that I can run with AMR? </div>
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<div>P.S: I am using mass diffusion, viscosity diffusion and thermal diffusion in my simulation. I tried using the explicit diffusion solver (Flux Based Diffusion) with AMR, but that gave wrong results. However, the implicit solver is providing the correct
results.</div>
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<div>Please let me know.</div>
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<div>Thank You <br clear="all">
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<div style="color:rgb(34,34,34)">Best Regards,</div>
<div style="color:rgb(34,34,34)"><br>
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<div style="color:rgb(34,34,34)">Madhav Nagori</div>
<div style="color:rgb(34,34,34)"><br>
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<div style="color:rgb(34,34,34)">PhD Candidate | Laboratory for Multiscale Computational Fluid Dynamics</div>
<div style="color:rgb(34,34,34)">Department of Mechanical Engineering and Engineering Sciences</div>
<div style="color:rgb(34,34,34)">University of North Carolina at Charlotte</div>
<div style="color:rgb(34,34,34)">Office: Duke 273, 9330 Robert D. Snyder Rd, Charlotte, NC 28262, USA</div>
<div style="color:rgb(34,34,34)">Email: <a href="mailto:mnagori@uncc.edu" target="_blank">
mnagori@uncc.edu</a><br>
</div>
<div style="color:rgb(34,34,34)">LinkedIn: <a href="http://www.linkedin.com/in/madhav-nagori" target="_blank">
www.linkedin.com/in/madhav-nagori</a></div>
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</blockquote></div><br clear="all"><div><br></div><span>-- </span><br><div dir="ltr"><div dir="ltr"><div style="color:rgb(34,34,34)">Best Regards,</div><div style="color:rgb(34,34,34)"><br></div><div style="color:rgb(34,34,34)">Madhav Nagori</div><div style="color:rgb(34,34,34)"><br></div><div style="color:rgb(34,34,34)">PhD Candidate | Laboratory for Multiscale Computational Fluid Dynamics</div><div style="color:rgb(34,34,34)">Department of Mechanical Engineering and Engineering Sciences</div><div style="color:rgb(34,34,34)">University of North Carolina at Charlotte</div><div style="color:rgb(34,34,34)">Office: Duke 273, 9330 Robert D. Snyder Rd, Charlotte, NC 28262, USA</div><div style="color:rgb(34,34,34)">Email: <a href="mailto:mnagori@uncc.edu" target="_blank">mnagori@uncc.edu</a><br></div><div style="color:rgb(34,34,34)">LinkedIn: <a href="http://www.linkedin.com/in/madhav-nagori" target="_blank">www.linkedin.com/in/madhav-nagori</a></div></div></div>
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</blockquote></div><br clear="all"><br><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div style="color:rgb(34,34,34)">Best Regards,</div><div style="color:rgb(34,34,34)"><br></div><div style="color:rgb(34,34,34)">Madhav Nagori</div><div style="color:rgb(34,34,34)"><br></div><div style="color:rgb(34,34,34)">PhD Candidate | Laboratory for Multiscale Computational Fluid Dynamics</div><div style="color:rgb(34,34,34)">Department of Mechanical Engineering and Engineering Sciences</div><div style="color:rgb(34,34,34)">University of North Carolina at Charlotte</div><div style="color:rgb(34,34,34)">Office: Duke 273, 9330 Robert D. Snyder Rd, Charlotte, NC 28262, USA</div><div style="color:rgb(34,34,34)">Email: <a href="mailto:mnagori@uncc.edu" target="_blank">mnagori@uncc.edu</a><br></div><div style="color:rgb(34,34,34)">LinkedIn: <a href="http://www.linkedin.com/in/madhav-nagori" target="_blank">www.linkedin.com/in/madhav-nagori</a></div></div></div></div>