<div dir="ltr">Hi Ryan,<div><br></div><div>I ended up being able to run the Sedov example by setting up the problem and compiling from a login node (making the corresponding login node directories to store the Makefile.h in as you suggested). I then used the command srun flash4 in my batch script instead of the mpirun command, and it ran smoothly! Thank you for the help!</div><div><br></div><div>Best,</div><div>Chip</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Jul 18, 2024 at 5:23 PM Ryan Farber <<a href="mailto:rjfarber@umich.edu" target="_blank">rjfarber@umich.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Charles,<br><br>Thank you for attaching your SLURM submission script, as well as your stdout.<div><br>Note the following lines from your stdout:</div><div> checking sites Aliases file<br> site directory for site <a href="http://gl3048.arc-ts.umich.edu" target="_blank">gl3048.arc-ts.umich.edu</a> not found;<br> using prototype Linux<br></div><div><br></div><div>So the setup command generates a Makefile based on the Makefile.h in the sites/Prototypes/Linux directory.</div><div>You then copied your Makefileh.h from sites to the object directory -- but setup already ran so it's probably not used at all.</div><div><br></div><div>You should instead either place your Makefile.h inside of Sites/Prototypes/Linux (to overwrite the default), create a directory sites/<a href="http://gl3048.arc-ts.umich.edu" target="_blank">gl3048.arc-ts.umich.edu</a> (as well as one per compute node and login node, gulp...), or modify the Aliases file.</div><div><br></div><div>Best wishes,</div><div><div><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div dir="ltr">--------<div>Ryan</div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Jul 18, 2024 at 12:04 PM Charles Peterson <<a href="mailto:chippete@umich.edu" target="_blank">chippete@umich.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Ryan,<div><br></div><div>Thanks for the quick response! The error I posted above is the entire stream from the returned .err file. Below I've also attached the .out file and the Makefile.h that I used. I also reached out to UM HPC support and am currently waiting on a response from them. Thank you for the suggestion!</div><div><br></div><div>Best,</div><div>Chip</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Jul 16, 2024 at 8:21 PM Ryan Farber <<a href="mailto:rjfarber@umich.edu" target="_blank">rjfarber@umich.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="auto">Hi Chip,<div><br></div><div>Your specific error I don’t believe I’ve encountered unfortunately. It would be helpful if you can attach the full stderr stream (combined with stdout is fine).</div><div><br></div><div>Other useful information might be in your Makefile.h and your batch script (if you’re compiling with “make -j” it’s possible the cluster is killing your job for using too many resources if that’s running on a login node.</div><div><br></div><div>If you’re compiling on a computer node, that should be fine but might depend on your cluster. If you’re on Great Lakes the note UM’s support is pretty great, and should have some experience supporting new FLASH users.</div><div><br></div><div>Best wishes,</div><div>Ryan</div><div><br><div dir="ltr">Sent from my iPhone</div><div dir="ltr"><br><blockquote type="cite">On Jul 16, 2024, at 5:45 PM, Charles Peterson <<a href="mailto:chippete@umich.edu" target="_blank">chippete@umich.edu</a>> wrote:<br><br></blockquote></div><blockquote type="cite"><div dir="ltr"><div dir="ltr">Hi flash users,<div><br></div><div>I am a new user to FLASH and have been trying to run FLASH on my University's HPC cluster (I'm also very new to using HPC's). The batch script that I've been working with first loads the following modules:</div><div><div><image.png></div><br></div><div>It then calls for the setup, compilation, and running of the Sedov example problem. After running this batch script, the setup process is successful, while an error is run into with running make:</div><div><div><image.png></div><br></div><div><div>Would anyone have any suggestions on how to fix this? Any and all help is greatly appreciated.</div><div><br></div><div>Thanks!</div><div>Chip</div><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><b>Charles (Chip) Peterson</b><div>University of Michigan '25</div><div>Engineering Physics</div><div>Nuclear Engineering and Radiological Sciences</div><div><a href="mailto:chippete@umich.edu" target="_blank">chippete@umich.edu</a> - (253)-255-7090</div></div></div></div></div>
<span>_______________________________________________</span><br><span>flash-users mailing list</span><br><span><a href="mailto:flash-users@flash.rochester.edu" target="_blank">flash-users@flash.rochester.edu</a></span><br><span></span><br><span>For list info, including unsubscribe:</span><br><span><a href="https://flash.rochester.edu/mailman/listinfo/flash-users" target="_blank">https://flash.rochester.edu/mailman/listinfo/flash-users</a></span><br></div></blockquote></div></div></blockquote></div><br clear="all"><div><br></div><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><b>Charles (Chip) Peterson</b><div>University of Michigan '25</div><div>Engineering Physics</div><div>Nuclear Engineering and Radiological Sciences</div><div><a href="mailto:chippete@umich.edu" target="_blank">chippete@umich.edu</a> - (253)-255-7090</div></div></div>
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</blockquote></div><br clear="all"><div><br></div><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><b>Charles (Chip) Peterson</b><div>University of Michigan '25</div><div>Engineering Physics</div><div>Nuclear Engineering and Radiological Sciences</div><div><a href="mailto:chippete@umich.edu" target="_blank">chippete@umich.edu</a> - (253)-255-7090</div></div></div>