[FLASH-USERS] Problems getting Flash3.0 to execute

[Elliot Parkin]

Hello,

Thanks for all the suggestions everyone. I forgot to mention that after using
the setup command I changed to the object directory. The flash3 binary is
definitely there and using the execute command,

 mpirun -np 1 ./flash3

now gives the error,

[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 1140850688) - process 0
 RuntimeParameters_read:  ignoring unknown parameter "basenm"...
 RuntimeParameters_read:  ignoring unknown parameter
"checkpointFileIntervalTime"...
rank 0 in job 2  linast14_40610   caused collective abort of all ranks
  exit status of rank 0: return code 0

I suspect this has something to do with my mpi setup. I've added a line into my
Makefile.h for the libmpich.a and libfmpich.a which reads:

LIB_MPI   = -L$(MPI_PATH)/lib -lmpich -lfmpich -lz

but I'm not sure if I've done this right or not.

Thanks for help,

Ross Parkin
Postgraduate Student
School of Physics and Astronomy
University of Leeds, UK


Quoting Elliot Parkin <phy1erp at leeds.ac.uk> on Thu 27 Mar 2008 16:59:18 GMT:

> Hello,
>
> I am attempting to run flash3.0 on a Linux machine but when I try and run the
> code I get this error:
>
> problem with execution of flash3  on  linast14:  [Errno 2] No such file or
> directory
>
> The command I used to execute flash was:
>
> mpirun -np 1 flash3
>
> To setup the test case I used: ./setup Sedov -auto +noio
>
> Then gmake was used to compile the code which gave SUCCESS but there was
> these
> warnings during the make process:
>
> Grid_releaseBlkPtr.F90:104: warning: extra tokens at end of #endif directive
>
> ... and,
>
>  In file quicksort_index.F90:93
>
>          if (jstack.gt.NSTACK) pause 'NSTACK too small in indexx'
>                                                                 1
> Warning: Obsolete: PAUSE statement at (1)
>  In file quicksort_index.F90:204
>
>          if (jstack.gt.NSTACK) pause 'NSTACK too small in indexx'
>                                                                 1
> Warning: Obsolete: PAUSE statement at (1)
>
>
> The Makefile.h I've constructed looks like this:
>
> # Library specific linking
> #
> #  If a FLASH module has a 'LIBRARY xxx' line in its Config file, we need to
> #  create a macro in this Makefile.h for LIB_xxx, which will be added to the
> #  link line when FLASH is built.  This allows us to switch between different
> #  (incompatible) libraries.  We also create a _OPT, _DEBUG, and _TEST
> #  library macro to add any performance-minded libraries (like fast math),
> #  depending on how FLASH was setup.
> #----------------------------------------------------------------------------
>
> LIB_HDF5 =  $(HDF5_PATH)/lib -lhdf5 -lz
> LIB_PNG  = -lpng -lz
>
> LIB_MPI   =
> LIB_NCMPI =
> LIB_MPE   =
>
>
> #----------------------------------------------------------------------------
> # Additional machine-dependent object files
> #
> #  Add any machine specific files here -- they will be compiled and linked
> #  when FLASH is built.
> #----------------------------------------------------------------------------
>
> MACHOBJ =
>
> #----------------------------------------------------------------------------
> # Additional commands
> #----------------------------------------------------------------------------
>
> MV = mv -f
> AR = ar -r
> RM = rm -f
> CD = cd
> RL = ranlib
> ECHO = echo
>
>
> Do you have any idea what may be wrong?
>
> Many thanks,
>
> Ross Parkin
> Postgraduate Student
> School of Physics and Astronomy
> University of Leeds, UK
>