[FLASH-USERS] No flash3 Executable File Found

[Gary F Forjan]

Hi Seyit

Thanks for the suggestion.  I'll check my directory for these files...

All the best, 
Gary

Gary Forjan
Department of Computational and Data Sciences
George Mason University, Fairfax, Va
gforjan at gmu.edu

----- Original Message -----
From: Seyit Hocuk <seyit at astro.rug.nl>
Date: Thursday, August 13, 2009 6:50 am
Subject: Re: [FLASH-USERS] No flash3 Executable File Found

> Hi Gary,
> 
> I once had something weird as well a while ago. The executable was 
> not 
> flash3 but a.out or b.out.
> 
> Check out if these files are there.
> 
> Seyit
> 
> 
> 
> Gary F Forjan wrote:
> > Hello all 
> >
> > Hope you are having an enjoyable summer.  I recently downloaded 
> FLASH3.2 and installed it on our SGI ALTIX ICE cluster.  I tried 
> to compile and run the Sedov explosion example as a test.  After 
> running the setup script, I moved to the object/ directory and 
> typed gmake to build the executable (as described in the User's 
> Guide).  I believe I have the correct compilers and library paths 
> set in my Makefile.h since it compiles all of the source code 
> files and I get a SUCCESS at the end of it.  Actually the last 
> output lines are 
> >
> > ut_quadraticInterpol.o workspace.o -L /sw//lib -lhdf5   
> > SUCCESS
> > gmake: warning:  Clock skew detected.  Your build may be incomplete.
> >
> >
> > But I cannot find the flash3 executable in the object/ directory 
> - as if the link step did not occur.  I know I must be missing 
> something basic but would anyone have an idea as to what might 
> have happened.  I have included my Makefile.h file below in case 
> it is of any help.  I am using an mpi wrapper for both the Intel 
> fortran and cc compilers.  I note that this makefile did work with 
> FLASH2.5 on the same system.
> >
> > Thank you for any comments or suggestions.
> >
> > Best regards,
> > Gary    
> >
> > Gary Forjan
> > Department of Computational and Data Sciences
> > George Mason University, Fairfax, Va
> > gforjan at gmu.edu
> >
> > ====================== MAKEFILE.H =============================
> >
> > # FLASH makefile definitions for ix86 Linux (Portland Group 
> compiler)>
> > # note, in order to get pgprof to work properly, it was 
> necessary to 
> > # download a new version from ftp://ftp.pgroup.com/ that plays 
> nicely> # with GNOME.
> >
> > #----------------------------------------------------------------
> ------------
> > # Set the HDF/HDF5 library paths -- these need to be updated for 
> your system
> > #----------------------------------------------------------------
> ------------
> >
> > #HDF4_PATH = /usr/local/hdf4
> > HDF4_PATH =
> > #HDF5_PATH = /opt/HDF5-1.4.2-patch1-serial/
> > HDF5_PATH = /sw/
> >
> > ZLIB_PATH  =
> >
> > PAPI_PATH  =
> > PAPI_FLAGS =
> >
> > NCMPI_PATH =
> > MPE_PATH   =
> >
> > #----------------------------------------------------------------
> ------------
> > # Compiler and linker commands
> > #
> > #   Use the MPICH wrappers around the compilers -- these will 
> automatically> #   load the proper libraries and include files.  
> Version of MPICH prior
> > #   to 1.2.2 (?) do not recognize .F90 as a valid Fortran file 
> extension.> #   You need to edit mpif90 and add .F90 to the test 
> of filename extensions,
> > #   or upgrade your MPICH.
> > #----------------------------------------------------------------
> ------------
> > #FCOMP   = mpif90
> > FCOMP = mpiifort
> > CCOMP   = mpiicc
> > CPPCOMP = mpiiCC
> > #LINK    = mpif90
> > LINK = mpiifort
> > # pre-processor flag
> > PP      = -D 
> >
> > #----------------------------------------------------------------
> ------------
> > # Compilation flags
> > #
> > #  Three sets of compilation/linking flags are defined: one for 
> optimized> #  code, one for testing, and one for debugging.  The 
> default is to use the 
> > #  _OPT version.  Specifying -debug to setup will pick the 
> _DEBUG version,
> > #  these should enable bounds checking.  Specifying _TEST is 
> used for 
> > #  flash_test, and is set for quick code generation, and 
> (sometimes) 
> > #  profiling.  The Makefile generated by setup will assign the 
> generic token 
> > #  (ex. FFLAGS) to the proper set of flags (ex. FFLAGS_OPT).
> > #----------------------------------------------------------------
> ------------
> >
> > #FFLAGS_OPT = -c -fast -r8 -i4 
> > FFLAGS_OPT = -c -r8 -i4
> > FFLAGS_DEBUG = -g -c -Mbounds -r8 -i4 
> > FFLAGS_TEST = -c -r8 -i4 -fast -Mprof=lines
> >
> > F90FLAGS =
> >
> > CFLAGS_OPT = -O2  -c
> > CFLAGS_DEBUG = -g -c
> > CFLAGS_TEST = -c 
> >
> > # if we are using HDF5, we need to specify the path to the 
> include files
> > CFLAGS_HDF5 = -I $(HDF5_PATH)/include
> >
> > CFLAGS_NCMPI =
> >
> > #----------------------------------------------------------------
> ------------
> > # Linker flags
> > #
> > #  There is a seperate version of the linker flags for each of 
> the _OPT, 
> > #  _DEBUG, and _TEST cases.
> > #----------------------------------------------------------------
> ------------
> >
> > LFLAGS_OPT   = -o
> > LFLAGS_DEBUG = -g -o
> > LFLAGS_TEST  = -Mprof=lines -o
> >
> > #----------------------------------------------------------------
> ------------
> > # Library specific linking
> > #
> > #  If a FLASH module has a 'LIBRARY xxx' line in its Config 
> file, we need to
> > #  create a macro in this Makefile.h for LIB_xxx, which will be 
> added to the
> > #  link line when FLASH is built.  This allows us to switch 
> between different
> > #  (incompatible) libraries.  We also create a _OPT, _DEBUG, and 
> _TEST> #  library macro to add any performance-minded libraries 
> (like fast math),
> > #  depending on how FLASH was setup.
> > #----------------------------------------------------------------
> ------------
> >
> > LIB_OPT   = 
> > LIB_DEBUG =
> > LIB_TEST  = 
> >
> > #LIB_HDF4  = -L $(HDF4_PATH)/lib -lmfhdf -ldf -ljpeg -lz
> > LIB_HDF4 = 
> > LIB_HDF5  = -L $(HDF5_PATH)/lib -lhdf5
> >
> > LIB_PAPI  = 
> > LIB_MATH  = -ldfftw -ldrfftw
> >
> > LIB_NCMPI =
> > LIB_MPE   =
> >
> > #----------------------------------------------------------------
> ------------
> > # Additional machine-dependent object files
> > #
> > #  Add any machine specific files here -- they will be compiled 
> and linked
> > #  when FLASH is built.
> > #----------------------------------------------------------------
> ------------
> >  
> > MACHOBJ =
> >  
> >
> > #----------------------------------------------------------------
> ------------
> > # Additional commands
> > #----------------------------------------------------------------
> ------------ 
> >
> > MV = mv -f
> > AR = ar -r
> > RM = rm -f
> > CD = cd
> > RL = ranlib
> > ECHO = echo
> >   
> 
>