[FLASH-USERS] flash-users Digest, Vol 45, Issue 8

[Stephen Brian Amsel]

I've attached the Makefile.h. It's almost identical to the Intel  
prototype Makefile.h under Linux.

I got HDF5 installed on my computer through tech support in my  
department because at the time I didn't have administrative privileges  
on my computer. (I've been trying to install FLASH on my desktop so  
that I could learn how to use it properly without tying up the  
cluster's head node waiting through the its queue as I try each  
different thing.) I don't know whether they just got the binary or  
downloaded the library's source without the headers.

Quoting flash-users-request at flash.uchicago.edu:

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> Today's Topics:
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>    1.  trouble compiling flash with hdf5 (Stephen Brian Amsel)
>    2. Re:  trouble compiling flash with hdf5 (John ZuHone)
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>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sat, 16 Jul 2011 20:41:01 -0400
> From: Stephen Brian Amsel <samsel at umich.edu>
> Subject: [FLASH-USERS] trouble compiling flash with hdf5
> To: flash-users at flash.uchicago.edu
> Message-ID: <20110716204101.10975dd2j5f79400 at web.mail.umich.edu>
> Content-Type: text/plain; charset=ISO-8859-1; DelSp="Yes";
> 	format="flowed"
>
> Hi,
>
> I'm trying to install FLASH4 (alpha) on machine with a Red Hat OS and
> an Intel processor using the Intel compiler. (I could not find the
> architecture of the Dell Optiplex GX620 if that matters.) A problem
> arises in io_h5_type.h. The include-command for hdf5.h works, but not
> the commands which use hid_t, which is used in hdf5.h. I get:
> io_h5_type.h(10): error: identifier "hid_t" is undefined
>    hid_t io_h5_type_hid_primitive(const int flashType);
>
> and the same for lines 11-13.
>
> When I got HDF5, I did not get all the headers. I found and downloaded
> the HDF5 header, but if there are any others specific to HDF5 that I
> need, I don't have them. I don't know if that is an issue as hid_t is
> used in HDF5 and that did not produce an error either here or in a
> test-program which included it. (The test-program compiled when it
> called nothing but a printf to say it ran successfully, but ran into
> an error when I tried to use hid_t.)
>
> -Stephen
>
>
> ------------------------------
>
> Message: 2
> Date: Sun, 17 Jul 2011 00:25:47 -0400
> From: John ZuHone <jzuhone at cfa.harvard.edu>
> Subject: Re: [FLASH-USERS] trouble compiling flash with hdf5
> To: Stephen Brian Amsel <samsel at umich.edu>
> Cc: flash-users at flash.uchicago.edu
> Message-ID: <C742315D-640C-4D09-9AE3-E6C9EFE1ED5D at cfa.harvard.edu>
> Content-Type: text/plain; charset=us-ascii
>
> Hi Stephen,
>
> A couple of things that may be helpful to us as we try to debug your problem:
>
> 1) Can you send us your Makefile.h? It is the Makefile definitions  
> file that is specific to your machine, which you should have  
> probably custom-edited from a similar one in FLASH4/sites.
>
> 2) Could you explain a bit more how you got HDF5? Did you download  
> the source from the website and compile and install it, or did you  
> have some sort of binary package?
>
> Best,
>
> John ZuHone
>
> On Jul 16, 2011, at 8:41 PM, Stephen Brian Amsel wrote:
>
>> Hi,
>>
>> I'm trying to install FLASH4 (alpha) on machine with a Red Hat OS  
>> and an Intel processor using the Intel compiler. (I could not find  
>> the architecture of the Dell Optiplex GX620 if that matters.) A  
>> problem arises in io_h5_type.h. The include-command for hdf5.h  
>> works, but not the commands which use hid_t, which is used in  
>> hdf5.h. I get:
>> io_h5_type.h(10): error: identifier "hid_t" is undefined
>>  hid_t io_h5_type_hid_primitive(const int flashType);
>>
>> and the same for lines 11-13.
>>
>> When I got HDF5, I did not get all the headers. I found and  
>> downloaded the HDF5 header, but if there are any others specific to  
>> HDF5 that I need, I don't have them. I don't know if that is an  
>> issue as hid_t is used in HDF5 and that did not produce an error  
>> either here or in a test-program which included it. (The  
>> test-program compiled when it called nothing but a printf to say it  
>> ran successfully, but ran into an error when I tried to use hid_t.)
>>
>> -Stephen
>
>
>
> ------------------------------
>
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>
> End of flash-users Digest, Vol 45, Issue 8
> ******************************************
>
>
>


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