[FLASH-USERS] FLASH a problem

[Majid Masnavi]

Hi Tom,

I have HDF5. I am working with FLASH for a while. Even now, everything is OK when I
run the Sedov. However, the problem happens in laser target simulation.

thanks
M

________________________________
From: Papatheodore, Thomas L [tpapathe at vols.utk.edu]
Sent: Wednesday, November 25, 2015 11:25 AM
To: Majid Masnavi; flash-users at flash.uchicago.edu
Subject: Re: FLASH a problem


It looks like you're crashing when you try to write your first checkpoint file. Do you have HDF5 installed on your machine? I have also run into problems with specific versions of HDF5 (I'm currently using version 1.8.12).


-Tom

________________________________
From: flash-users-bounces at flash.uchicago.edu <flash-users-bounces at flash.uchicago.edu> on behalf of Majid Masnavi <majidmasnavi at creol.ucf.edu>
Sent: Wednesday, November 25, 2015 11:02 AM
To: flash-users at flash.uchicago.edu
Subject: [FLASH-USERS] FLASH a problem

Hello FLASH-users,

I have installed a new parallel code that woks using openmpi.
After that I receive the following errors from the FLASH code when I want to run hydrodynamics calculation.
I am using Ubuntu 14.
Any comments?

Many Many thanks
M

\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\

Ready to call Hydro_init
 Hydro initialized
 Gravity initialized
 Initial dt verified

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:
#0  0x7F58A345D777
#1  0x7F58A345DD7E
#0  0x7F482B3BE777
#1  0x7F482B3BED7E
#2  0x7F58A297BD3F
#0  0x7F7BB3C19777
#0  0x7F7EF22ED777
#1  0x7F7EF22EDD7E
#0  0x7FA13D4AF777
#2  0x7F482A8DCD3F
#3  0x7F482B7256D7
#2  0x7F7EF180BD3F
#1  0x7F7BB3C19D7E
#2  0x7F7BB3137D3F
#1  0x7FA13D4AFD7E
#3  0x7F58A37C46D7
#3  0x7F7BB3F806D7
#3  0x7F7EF26546D7
#2  0x7FA13C9CDD3F
#3  0x7FA13D8166D7
#4  0x6967B5 in H5FD_mpio_open at H5FDmpio.c:1127
#4  0x6967B5 in H5FD_mpio_open at H5FDmpio.c:1127
#4  0x6967B5 in H5FD_mpio_open at H5FDmpio.c:1127
#5  0x68C7FE in H5FD_open at H5FD.c:1100
#5  0x68C7FE in H5FD_open at H5FD.c:1100
#5  0x68C7FE in H5FD_open at H5FD.c:1100
#6  0x67F1D3 in H5F_open at H5F.c:1218
#7  0x68018F in H5Fcreate at H5F.c:1451
#6  0x67F1D3 in H5F_open at H5F.c:1218
#7  0x68018F in H5Fcreate at H5F.c:1451
#6  0x67F1D3 in H5F_open at H5F.c:1218
#7  0x68018F in H5Fcreate at H5F.c:1451
#8  0x55D9F2 in io_h5init_file_ at io_h5file_interface.c:187
#8  0x55D9F2 in io_h5init_file_ at io_h5file_interface.c:187
#8  0x55D9F2 in io_h5init_file_ at io_h5file_interface.c:187
#9  0x560A68 in io_initfile_ at io_initFile.F90:55
#9  0x560A68 in io_initfile_ at io_initFile.F90:55
#9  0x560A68 in io_initfile_ at io_initFile.F90:55
#10  0x440343 in io_writecheckpoint_ at IO_writeCheckpoint.F90:112
#10  0x440343 in io_writecheckpoint_ at IO_writeCheckpoint.F90:112
#10  0x440343 in io_writecheckpoint_ at IO_writeCheckpoint.F90:112
#11  0x43FF24 in io_outputinitial_ at IO_outputInitial.F90:76
#11  0x43FF24 in io_outputinitial_ at IO_outputInitial.F90:76
#11  0x43FF24 in io_outputinitial_ at IO_outputInitial.F90:76
#12  0x40F024 in driver_initflash_ at Driver_initFlash.F90:212
#12  0x40F024 in driver_initflash_ at Driver_initFlash.F90:212
#12  0x40F024 in driver_initflash_ at Driver_initFlash.F90:212
#13  0x4068E1 in flash at Flash.F90:49
#13  0x4068E1 in flash at Flash.F90:49
#14  0x7F7BB3122EC4
#13  0x4068E1 in flash at Flash.F90:49
#14  0x7F7EF17F6EC4
#14  0x7F482A8C7EC4
#4  0x6967B5 in H5FD_mpio_open at H5FDmpio.c:1127
#4  0x6967B5 in H5FD_mpio_open at H5FDmpio.c:1127
#5  0x68C7FE in H5FD_open at H5FD.c:1100
#5  0x68C7FE in H5FD_open at H5FD.c:1100
#6  0x67F1D3 in H5F_open at H5F.c:1218
#7  0x68018F in H5Fcreate at H5F.c:1451
#6  0x67F1D3 in H5F_open at H5F.c:1218
#7  0x68018F in H5Fcreate at H5F.c:1451
#8  0x55D9F2 in io_h5init_file_ at io_h5file_interface.c:187
#9  0x560A68 in io_initfile_ at io_initFile.F90:55
#8  0x55D9F2 in io_h5init_file_ at io_h5file_interface.c:187
#9  0x560A68 in io_initfile_ at io_initFile.F90:55
#10  0x440343 in io_writecheckpoint_ at IO_writeCheckpoint.F90:112
#10  0x440343 in io_writecheckpoint_ at IO_writeCheckpoint.F90:112
#11  0x43FF24 in io_outputinitial_ at IO_outputInitial.F90:76
#11  0x43FF24 in io_outputinitial_ at IO_outputInitial.F90:76
#12  0x40F024 in driver_initflash_ at Driver_initFlash.F90:212
#13  0x4068E1 in flash at Flash.F90:49
#14  0x7FA13C9B8EC4
#12  0x40F024 in driver_initflash_ at Driver_initFlash.F90:212
#13  0x4068E1 in flash at Flash.F90:49
#14  0x7F58A2966EC4
--------------------------------------------------------------------------
mpirun noticed that process rank 3 with PID 9101 on node majid-sim exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
3 total processes killed (some possibly by mpirun during cleanup)



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