[FLASH-USERS] Compiling FLASH4.3

[Ritam Mallick]

Dear friends,

I am not able to plot the sedov hdf5 plt cnt 000 files using idl.
I have downloaded idl and using this csh script

ritam at ritam:~/FLASH4.3/object$ csh
% setenv XFLASH3 DIR "<FLASH4.3 >/tools/fidlr3.0"
setenv: Too many arguments.
% setenv XFLASH3_DIR "<FLASH4.3>/tools/fidlr3.0"
% setenv IDL_PATH "${XFLASH3_DIR}:$IDL_PATH"
IDL_PATH: Undefined variable.
% setenv IDL_PATH "${XFLASH3_DIR}":${IDL_DIR}:${/usr/local/idl/idl85}/lib
Illegal variable name.
% setenv IDL_PATH "${XFLASH3_DIR}":${IDL_DIR}:${IDL_DIR}/lib
IDL_DIR: Undefined variable.
% setenv IDL_PATH
"${XFLASH3_DIR}":${/usr/local/idl/idl85}:${/usr/local/idl/idl85}/lib
Illegal variable name.
% setenv IDL_PATH "${XFLASH3_DIR}":${/usr/local/idl}:${/usr/local/idl}/lib
Illegal variable name.

my idl files are in /usr/local/idl/ this directory.
Can anyone help in pointing my mistake.

Best Regards,

Ritam Mallick




On Wed, Jul 20, 2016 at 4:00 PM, Ritam Mallick <mallick at iiserb.ac.in> wrote:

> Dear Dominik,
>
> Thank you very much for the help. Without your help I would be in deep
> waters.
>
> A small change in the Makefile.h (ubuntu 16.04) is needed to run FLASH4.3
> in my
> machine.
>
> Thank you for your help.
>
> Regards,
>
> Ritam Mallick
>
> On Wed, Jul 20, 2016 at 2:34 PM, Dominik Derigs <derigs at ph1.uni-koeln.de>
> wrote:
>
>> Hey Ritam,
>>
>> Note that with Ubuntu it is *not* needed to install/compile any library!
>> Everything can be covered by libraries that are available through the usual
>> Ubuntu package management system.
>> I described a procedure some while ago that enables you to install FLASH
>> in less than five minutes on any Ubuntu machine (also applies to Linux Mint
>> and others). You just have to do four easy steps:
>>
>>    1. Download/extract latest version of FLASH
>>    2. Use the command provided below to install MPI and HDF5
>>    3. Use one of the provided Makefile.h (see attachment)
>>    4. Setup, compile and run FLASH.
>>
>> I will forward you the commands that I used for installing FLASH on
>> Ubuntu 14.04 and 16.04 so 15.04 might need a mixture:
>>
>> Ubuntu 14.04
>> sudo apt-get install mpich2 libmpich-dev libhdf5-7 libhdf5-dev
>>
>> Ubuntu 16.04
>> sudo apt-get install mpich libmpich-dev libhdf5-dev libhdf5-mpich-dev
>>
>> Note that by these commands, also mpich will be installed. Also note that
>> the Makefiles are tuned such that they worked for me. It might be that you
>> have to modify something, but I think it is unlikely.
>>
>> Maybe we should add this to some official place like the FLASH manual?
>>
>> Best regards,
>> Dominik
>>
>> 2016-07-20 10:00 GMT+02:00 Ritam Mallick <mallick at iiserb.ac.in>:
>>
>>> Dear Convenor,
>>>
>>> I am an new member in the FLASH community. I am trying to compile
>>> FLASH4.3. However I cannot do that and it is showing some error. I am using
>>> ubuntu 15.04 platform. The error is shown during the running of make. There
>>> is no error if I choose +noio option. However, then I do not get any
>>> output. The problem is maybe linked to the linking of HDF5 files. However I
>>> cannot debug the error.
>>> I am using the particular Makefile (attatched). The error message is as
>>> follows ..
>>>
>>> /usr/bin/mpif90 -ggdb -c -O2 -fdefault-real-8 -fdefault-double-8
>>> -Wuninitialized  -DMAXBLOCKS=1000 -DNXB=8 -DNYB=8 -DNZB=1 -DN_DIM=2
>>> Hydro_recalibrateEints.F90
>>> /usr/bin/mpif90 -ggdb -c -O2 -fdefault-real-8 -fdefault-double-8
>>> -Wuninitialized  -DMAXBLOCKS=1000 -DNXB=8 -DNYB=8 -DNZB=1 -DN_DIM=2
>>> gr_xyzToBlock.F90
>>> /usr/bin/mpicc -I/usr/home/ritam/hdf5-1.8.4-patch1/hdf5/include -ggdb -c
>>> -O2 -Wuninitialized -D_FORTIFY_SOURCE=2 -DMAXBLOCKS=1000 -DNXB=8 -DNYB=8
>>> -DNZB=1 -DN_DIM=2 io_attribute.c
>>> In file included from io_h5_attribute.h:7:0,
>>>                  from io_attribute.h:13,
>>>                  from io_attribute.c:1:
>>> io_h5_type.h:7:18: fatal error: hdf5.h: No such file or directory
>>>  #include <hdf5.h>
>>>                   ^
>>> compilation terminated.
>>> Makefile:123: recipe for target 'io_attribute.o' failed
>>> make: *** [io_attribute.o] Error 1
>>>
>>>
>>> Hope you can help me in this regard.
>>>
>>>
>>> Best Regards,
>>>
>>> Ritam Mallick
>>>
>>
>>
>>
>> --
>> Dominik Derigs
>> I. Physikalisches Institut
>> Universität zu Köln
>> Zülpicher Straße 77
>> 50937 Köln
>> GERMANY
>>
>> https://hera.ph1.uni-koeln.de/~derigs/
>>
>> Tel. (+49|0) 221 470-8352
>> Fax. (+49|0) 221 470-5162
>>
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