[FLASH-USERS] Error writing initial HDF5 checkpoint and plot files

Ryan Farber rjfarber at umich.edu
Mon Dec 12 12:54:43 EST 2022


Hi Deepali,

I haven't seen your error before:
flash4: io_h5create_dataset.c:29: io_h5create_dataset: Assertion
`diskSize[i] > 0' failed.

But from the sound of it, that file doesn't think you have space on the
hard drive it's trying to write to. Maybe a permissions problem(?)

Best,
--------
Ryan


On Mon, Dec 12, 2022 at 5:44 PM Deepali <ddeepali at hs.uni-hamburg.de> wrote:

> Dear Flash users & developers,
>
> I am trying to simulate a 3D Bonnor-Ebert sphere type setup using AMR grid
> on HLRN machine (https://www.hlrn.de/doc/display/PUB/Usage+Guide). I use
> the following compiler and hdf5 modules:
>
> intel/18.0.6
>
> impi/2018.5(default)
>
> hdf5/intel/1.10.5
>
> But I am facing a problem with the writing of initial HDF5 checkpoint and
> plot files. FLASH initializes all the units needed and then produces the
> error mentioned in the simulation log file (flash.log) attached with this
> email.
>
> I would appreciate any help or suggestions in order to resolve this
> error. Please let me know if I should share any other information.
>
> Thanks and regards,
>
> Deepali
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>
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