[FLASH-USERS] Fortran interface of the HDF5 library for CCSN1d

[kiyarash Taghiniyarami]

 Dear Evan,
Thank you, that resolves the issue, but now there is another problem with
running the code. I attached it as a note file to the email.
It seems due to the Shen et al Nuclear EoS table.
In the EosNuclear/config there is a line:
D eos_file  Filename of the table.  Data may be found at
stellarcollapse.org/equationofstate.
PARAMETER eos_file  STRING
"myshen_test_220r_180t_50y_extT_analmu_20100322_SVNr28.h5"

So do you know how to resolve this?

Best,
Khodayar

On Wed, Feb 9, 2022 at 11:21 PM Evan Patrick O'Connor <
evan.oconnor at astro.su.se> wrote:

> Hi,
>
>
> I see this too. This seems to stem from the top of that file.
>
>
> #ifdef HAVE_HDF5_FORTRAN
>
> #define IO_USE_HDF5_MOD HAVE_HDF5_FORTRAN
>
> #else
>
> #ifdef FLASH_HAVE_HDF5_MOD
>
> #define IO_USE_HDF5_MOD FLASH_HAVE_HDF5_MOD
>
> #endif
>
> #endif
>
>
> the variable FLASH_HAVE_HDF5_MOD is defined in the Flash.h file but it is
> not set to anything (the line is just #define FLASH_HAVE_HDF5_MOD) so then
> the variable IO_USE_HDF5_MOD is defined, but not set to anything. That is
> why there are issues on line 47 and 60.  A quick fix (caveat: I
> don't know the full details of the difference between HAVE_HDF5_FORTRAN
> and FLASH_HAVE_HDF5_MOD) is to just replace
>
>
> #define IO_USE_HDF5_MOD FLASH_HAVE_HDF5_MOD
>
>
> with
>
>
> #define IO_USE_HDF5_MOD 1
>
>
> with that I can get ccsn1d to build successfully in 4.6.2
>
>
> Evan
> ------------------------------
> *From:* flash-users <flash-users-bounces at flash.rochester.edu> on behalf
> of kiyarash Taghiniyarami <kiyarash.niyarami at gmail.com>
> *Sent:* Monday, February 7, 2022 9:50:11 PM
> *To:* flash-users at flash.rochester.edu
> *Subject:* [FLASH-USERS] Fortran interface of the HDF5 library for CCSN1d
>
> Dear all FLASH users,
>
> I tried to compile a core collapse supernova in 1D but still do not want
> to change the *source/physics/Eos/EosNuclear/Config *because I need to
> work with EosNuclear as well. To do so, the HDF5 needs Fortran bindings and
> I build it with the following command:
> *CC=/home/taghinia/FLASH/MPICH/mpich-install/bin/mpicc
>  /home/taghinia/FLASH/HDF5/hdf5-1.10.5/configure
> --prefix=/home/taghinia/FLASH/HDF5/HDF5-install-oldversion/
>  --enable-fortran  --enable-parallel --enable-shared --with-pic
> --with-default-api-version=v16
>  --with-zlib=/home/taghinia/FLASH/zlib/zlib-install/include,/home/taghinia/FLASH/zlib/zlib-install/lib
> *
> but it seems not working properly because after CCSN1D compilation I get
> the following error:
>
>
>
>
>
>
>
>
>
>
>
> *io_intfTypesModule.F90:47:0:    47 | #if IO_USE_HDF5_MOD == 0       |
> Error: operator '==' has no left operand io_intfTypesModule.F90:60:0:    60
> | #if (IO_USE_HDF5_MOD != 0)       | Error: operator '!=' has no left
> operand /home/taghinia/FLASH/MPICH/mpich-install/bin/mpif90 -ggdb -c -O2
> -fdefault-real-8 -fdefault-double-8 -Wuninitialized -g -O2
> -Wno-argument-mismatch -DMAXBLOCKS=1000 -DNXB=16 -DNYB=1 -DNZB=1 -DN_DIM=1
> Logfile_data.F90 io_intfTypesModule.F90:66:42:*
>
>
>
>
>
> *   66 |   integer,parameter :: io_fileID_t = FLASH_IO_FILEID_T       |
>                                        1 Error: Symbol ‘hid_t’ at (1) has
> no IMPLICIT type make: *** [Makefile:115: io_intfTypesModule.mod] Error 1
> make: *** Waiting for unfinished jobs....*
> I also made some changes to the Makefile.h as:
>
> F90FLAGS = -I ${HDF5_PATH}/include -DH5_USE_16_API
>
> LIB_HDF5  = -L${HDF5_PATH}/lib -lhdf5_fortran -lhdf5  -lz
>
> but got the same error. Could anyone help me with that? Kind Regards,
> Khodayar
>
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