[FLASH-USERS] FLASH4.3 compiling error

[Scott Feister]

Hi Mehrnoosh,

Did you create a site-specific Makefile for your cluster (in the "sites"
directory) before calling setup? In that Makefile, do you point to the
desired HDF5 and MPI library paths?

It's very important to use the same version of fortran compilers and MPI to
build FLASH as was used to build HDF5. E.g. if you point to HDF5 libraries
that were built with Intel compiler 12 and OpenMPI 2.3, you need to build
FLASH with the same versions of these compilers. If you point to HDF5
libraries built with GNU compilers 6.1 and mvapich, same story. If you
haven't verified that part, start there!

Good luck!

Best,

Scott


Scott Feister, Ph.D.
Postdoctoral Researcher, Flash Center for Computational Science
University of Chicago, Department of Astronomy and Astrophysics

On Fri, Jun 9, 2017 at 6:01 PM, Mehrnoosh Tahani <mtahani at ucalgary.ca>
wrote:

> Hello there,
>
>
> I am new to FLASH and I'm trying to compile and run FLASH4.3 on
> SciNet(GPC)
> <https://wiki.scinet.utoronto.ca/wiki/index.php/GPC_Quickstart>. When I
> do 'make' in the object folder I receive the following error message:
>
>
> mpicc -I /scinet/gpc/Libraries/HDF5-1.8.11/v18-openmpi-intel/include -c
> -g   -DMAXBLOCKS=500 -DNXB=8 -DNYB=8 -DNZB=8 -DN_DIM=3 io_h5_attribute.c
>
> io_h5_attribute.c(48): error #165: too few arguments in function call
>
>       dsetID = H5Dopen(hFileID, datasetName);
>
>                                            ^
>
>
> io_h5_attribute.c(55): error #165: too few arguments in function call
>
>          attDataspace, H5P_DEFAULT);
>
>                                   ^
>
>
> io_h5_attribute.c(101): error #165: too few arguments in function call
>
>       dsetID = H5Dopen(hFileID, datasetName);
>
>                                            ^
>
>
> compilation aborted for io_h5_attribute.c (code 2)
>
> make: *** [io_h5_attribute.o] Error 2
>
> I tried all the available versions of HDF5 and gcc in SciNet but I got the
> same error with each of them. I have FLASH working on my Mac with an old
> version of gcc which is not available on SciNet.
>
> I found here
> <http://flash.uchicago.edu/pipermail/flash-users/2013-September/001354.html> that
> my compilation command is probably not pointing to the right include
> directory for HDF5 headers. But I couldn't find anything wrong with the
> path. Could you please help me on this? (http://flash.uchicago.edu/
> pipermail/flash-users/2013-September/001354.html)
>
> Many thanks,
>
> Mehrnoosh
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Mehrnoosh Tahani, MSc. (Physics)
> PhD Student, Astrophysics
> Department of Physics & Astronomy
> University of Calgary
>
> mtahani at ucalgary.ca
>
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