[FLASH-USERS] Fortran interface of the HDF5 library for CCSN1d

[Evan Patrick O'Connor]

Hi,

You can find many tables in this format here: https://ttt.astro.su.se/~eoco/eos.html

Set the eos_table variable in the par file to the path to one of these tables.

If you have any questions about them, please do ask.

Evan
________________________________
From: kiyarash Taghiniyarami <kiyarash.niyarami at gmail.com>
Sent: Monday, February 14, 2022 8:29:11 PM
To: Evan Patrick O'Connor; flash-users at flash.rochester.edu
Subject: Re: [FLASH-USERS] Fortran interface of the HDF5 library for CCSN1d

 Dear Evan,
Thank you, that resolves the issue, but now there is another problem with running the code. I attached it as a note file to the email.
It seems due to the Shen et al Nuclear EoS table.
In the EosNuclear/config there is a line:
D eos_file  Filename of the table.  Data may be found at stellarcollapse.org/equationofstate<http://stellarcollapse.org/equationofstate>.
PARAMETER eos_file  STRING "myshen_test_220r_180t_50y_extT_analmu_20100322_SVNr28.h5"

So do you know how to resolve this?

Best,
Khodayar

On Wed, Feb 9, 2022 at 11:21 PM Evan Patrick O'Connor <evan.oconnor at astro.su.se<mailto:evan.oconnor at astro.su.se>> wrote:

Hi,


I see this too. This seems to stem from the top of that file.


#ifdef HAVE_HDF5_FORTRAN

#define IO_USE_HDF5_MOD HAVE_HDF5_FORTRAN

#else

#ifdef FLASH_HAVE_HDF5_MOD

#define IO_USE_HDF5_MOD FLASH_HAVE_HDF5_MOD

#endif

#endif


the variable FLASH_HAVE_HDF5_MOD is defined in the Flash.h file but it is not set to anything (the line is just #define FLASH_HAVE_HDF5_MOD) so then the variable IO_USE_HDF5_MOD is defined, but not set to anything. That is why there are issues on line 47 and 60.  A quick fix (caveat: I don't know the full details of the difference between HAVE_HDF5_FORTRAN and FLASH_HAVE_HDF5_MOD) is to just replace


#define IO_USE_HDF5_MOD FLASH_HAVE_HDF5_MOD


with


#define IO_USE_HDF5_MOD 1


with that I can get ccsn1d to build successfully in 4.6.2


Evan

________________________________
From: flash-users <flash-users-bounces at flash.rochester.edu<mailto:flash-users-bounces at flash.rochester.edu>> on behalf of kiyarash Taghiniyarami <kiyarash.niyarami at gmail.com<mailto:kiyarash.niyarami at gmail.com>>
Sent: Monday, February 7, 2022 9:50:11 PM
To: flash-users at flash.rochester.edu<mailto:flash-users at flash.rochester.edu>
Subject: [FLASH-USERS] Fortran interface of the HDF5 library for CCSN1d

Dear all FLASH users,

I tried to compile a core collapse supernova in 1D but still do not want to change the source/physics/Eos/EosNuclear/Config because I need to work with EosNuclear as well. To do so, the HDF5 needs Fortran bindings and I build it with the following command: CC=/home/taghinia/FLASH/MPICH/mpich-install/bin/mpicc  /home/taghinia/FLASH/HDF5/hdf5-1.10.5/configure --prefix=/home/taghinia/FLASH/HDF5/HDF5-install-oldversion/  --enable-fortran  --enable-parallel --enable-shared --with-pic --with-default-api-version=v16  --with-zlib=/home/taghinia/FLASH/zlib/zlib-install/include,/home/taghinia/FLASH/zlib/zlib-install/lib

but it seems not working properly because after CCSN1D compilation I get the following error:
io_intfTypesModule.F90:47:0:

   47 | #if IO_USE_HDF5_MOD == 0
      |
Error: operator '==' has no left operand
io_intfTypesModule.F90:60:0:

   60 | #if (IO_USE_HDF5_MOD != 0)
      |
Error: operator '!=' has no left operand
/home/taghinia/FLASH/MPICH/mpich-install/bin/mpif90 -ggdb -c -O2 -fdefault-real-8 -fdefault-double-8 -Wuninitialized -g -O2 -Wno-argument-mismatch -DMAXBLOCKS=1000 -DNXB=16 -DNYB=1 -DNZB=1 -DN_DIM=1 Logfile_data.F90
io_intfTypesModule.F90:66:42:

   66 |   integer,parameter :: io_fileID_t = FLASH_IO_FILEID_T
      |                                          1
Error: Symbol ‘hid_t’ at (1) has no IMPLICIT type
make: *** [Makefile:115: io_intfTypesModule.mod] Error 1
make: *** Waiting for unfinished jobs....
I also made some changes to the Makefile.h as:

F90FLAGS = -I ${HDF5_PATH}/include -DH5_USE_16_API

LIB_HDF5  = -L${HDF5_PATH}/lib -lhdf5_fortran -lhdf5  -lz

but got the same error. Could anyone help me with that? Kind Regards, Khodayar
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