[FLASH-USERS] Fortran interface of the HDF5 library for CCSN1d

[kiyarash Taghiniyarami]

Thanks a lot Evan!

On Mon, Feb 14, 2022 at 11:12 PM Evan Patrick O'Connor <
evan.oconnor at astro.su.se> wrote:

> Hi,
>
> You can find many tables in this format here:
> https://ttt.astro.su.se/~eoco/eos.html
>
> Set the eos_table variable in the par file to the path to one of these
> tables.
>
> If you have any questions about them, please do ask.
>
> Evan
> ------------------------------
> *From:* kiyarash Taghiniyarami <kiyarash.niyarami at gmail.com>
> *Sent:* Monday, February 14, 2022 8:29:11 PM
> *To:* Evan Patrick O'Connor; flash-users at flash.rochester.edu
> *Subject:* Re: [FLASH-USERS] Fortran interface of the HDF5 library for
> CCSN1d
>
>  Dear Evan,
> Thank you, that resolves the issue, but now there is another problem with
> running the code. I attached it as a note file to the email.
> It seems due to the Shen et al Nuclear EoS table.
> In the EosNuclear/config there is a line:
> D eos_file  Filename of the table.  Data may be found at
> stellarcollapse.org/equationofstate.
> PARAMETER eos_file  STRING
> "myshen_test_220r_180t_50y_extT_analmu_20100322_SVNr28.h5"
>
> So do you know how to resolve this?
>
> Best,
> Khodayar
>
> On Wed, Feb 9, 2022 at 11:21 PM Evan Patrick O'Connor <
> evan.oconnor at astro.su.se> wrote:
>
>> Hi,
>>
>>
>> I see this too. This seems to stem from the top of that file.
>>
>>
>> #ifdef HAVE_HDF5_FORTRAN
>>
>> #define IO_USE_HDF5_MOD HAVE_HDF5_FORTRAN
>>
>> #else
>>
>> #ifdef FLASH_HAVE_HDF5_MOD
>>
>> #define IO_USE_HDF5_MOD FLASH_HAVE_HDF5_MOD
>>
>> #endif
>>
>> #endif
>>
>>
>> the variable FLASH_HAVE_HDF5_MOD is defined in the Flash.h file but it
>> is not set to anything (the line is just #define FLASH_HAVE_HDF5_MOD) so
>> then the variable IO_USE_HDF5_MOD is defined, but not set to anything.
>> That is why there are issues on line 47 and 60.  A quick fix (caveat: I
>> don't know the full details of the difference between HAVE_HDF5_FORTRAN
>> and FLASH_HAVE_HDF5_MOD) is to just replace
>>
>>
>> #define IO_USE_HDF5_MOD FLASH_HAVE_HDF5_MOD
>>
>>
>> with
>>
>>
>> #define IO_USE_HDF5_MOD 1
>>
>>
>> with that I can get ccsn1d to build successfully in 4.6.2
>>
>>
>> Evan
>> ------------------------------
>> *From:* flash-users <flash-users-bounces at flash.rochester.edu> on behalf
>> of kiyarash Taghiniyarami <kiyarash.niyarami at gmail.com>
>> *Sent:* Monday, February 7, 2022 9:50:11 PM
>> *To:* flash-users at flash.rochester.edu
>> *Subject:* [FLASH-USERS] Fortran interface of the HDF5 library for CCSN1d
>>
>> Dear all FLASH users,
>>
>> I tried to compile a core collapse supernova in 1D but still do not want
>> to change the *source/physics/Eos/EosNuclear/Config *because I need to
>> work with EosNuclear as well. To do so, the HDF5 needs Fortran bindings and
>> I build it with the following command:
>> *CC=/home/taghinia/FLASH/MPICH/mpich-install/bin/mpicc
>>  /home/taghinia/FLASH/HDF5/hdf5-1.10.5/configure
>> --prefix=/home/taghinia/FLASH/HDF5/HDF5-install-oldversion/
>>  --enable-fortran  --enable-parallel --enable-shared --with-pic
>> --with-default-api-version=v16
>>  --with-zlib=/home/taghinia/FLASH/zlib/zlib-install/include,/home/taghinia/FLASH/zlib/zlib-install/lib
>> *
>> but it seems not working properly because after CCSN1D compilation I get
>> the following error:
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> *io_intfTypesModule.F90:47:0:    47 | #if IO_USE_HDF5_MOD == 0       |
>> Error: operator '==' has no left operand io_intfTypesModule.F90:60:0:    60
>> | #if (IO_USE_HDF5_MOD != 0)       | Error: operator '!=' has no left
>> operand /home/taghinia/FLASH/MPICH/mpich-install/bin/mpif90 -ggdb -c -O2
>> -fdefault-real-8 -fdefault-double-8 -Wuninitialized -g -O2
>> -Wno-argument-mismatch -DMAXBLOCKS=1000 -DNXB=16 -DNYB=1 -DNZB=1 -DN_DIM=1
>> Logfile_data.F90 io_intfTypesModule.F90:66:42:*
>>
>>
>>
>>
>>
>> *   66 |   integer,parameter :: io_fileID_t = FLASH_IO_FILEID_T       |
>>                                        1 Error: Symbol ‘hid_t’ at (1) has
>> no IMPLICIT type make: *** [Makefile:115: io_intfTypesModule.mod] Error 1
>> make: *** Waiting for unfinished jobs....*
>> I also made some changes to the Makefile.h as:
>>
>> F90FLAGS = -I ${HDF5_PATH}/include -DH5_USE_16_API
>>
>> LIB_HDF5  = -L${HDF5_PATH}/lib -lhdf5_fortran -lhdf5  -lz
>>
>> but got the same error. Could anyone help me with that? Kind Regards,
>> Khodayar
>>
>
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