[FLASH-USERS] Problem with Compiling Flash3.0

[Anshu Dubey]

It appears that in your Makefile.h you haven't specified the correct path
for hdf5 library.
Anshu

On Mon, Jun 2, 2008 at 11:20 AM, Seyit Hocuk <seyit at astro.rug.nl> wrote:

> Hi,
>
> I am in the middle of switching to FLASH3.0 after a lot of suggestions to
> do that. However, whenever I compile a standard problem, while making I get
> the error message shown below. It might be related to my compiler or to
> HDF5.
>
> The compiler is this:
> /opt/intel/fce/10.1.012/bin/ifort
>
> HDF5 version:
> I tried both 1.6.6 and 1.6.7
>
> The flags for the compiler I use are this:
> FFLAGS_OPT   =  -c -r8 -i4 -fast -ipo -I $(MPI_PATH)/include
> FFLAGS_DEBUG =  -c -r8 -i4 -I $(MPI_PATH)/include
> FFLAGS_TEST  =  -c -r8 -i4 -I $(MPI_PATH)/include
>
> CFLAGS_HDF5 = -I $(HDF5_PATH)/include
>
> CFLAGS_OPT   = -c -I$(MPI_PATH)/include
> CFLAGS_DEBUG = -c -g
> CFLAGS_TEST  = -c -02
>
>
> UNAME -a :
> Linux si01 2.6.22-14 #6 SMP Tue Mar 11 15:43:58 CET 2008 x86_64 GNU/Linux
>
>
>
> Does anyone have any experience on this problem.
>
> Thanks,
> Seyit
>
>
>
>
>
> workspace.o -L/home/users/seyit/Libraries/Hdf5-166/lib -lhdf5 -lz    -L
> /home/users/seyit/mpi/mpich2/lib  -lmpich
> ipo: warning #11043: unresolved H5Fclose
>       Referenced in io_h5file_interface.o
> ipo: warning #11043: unresolved H5check_version
>       Referenced in io_h5file_interface.o
> ipo: warning #11043: unresolved H5Fopen
>       Referenced in io_h5file_interface.o
> ipo: warning #11043: unresolved H5Fcreate
>       Referenced in io_h5file_interface.o
> ipo: warning #11043: unresolved H5Dopen
>       Referenced in io_h5read_bflags.o
>       Referenced in io_h5read_blk_particle_info.o
>       Referenced in io_h5read_blksize.o
>       Referenced in io_h5read_bndbox.o
>       Referenced in io_h5read_coords.o
>       Referenced in io_h5read_generic_int_arr.o
>       Referenced in io_h5read_generic_real_arr.o
>       Referenced in io_h5read_gid.o
>       Referenced in io_h5read_lists.o
>       Referenced in io_h5read_localnp.o
>       Referenced in io_h5read_lrefine.o
>       Referenced in io_h5read_nodetype.o
>       Referenced in io_h5read_particles.o
>       Referenced in io_h5read_unknowns.o
>       Referenced in io_h5read_which_child.o
>       Referenced in io_h5write_bflags.o
>       Referenced in io_h5write_blk_particle_info.o
>       Referenced in io_h5write_blksize.o
> ...
> ...
> ... etc.
> ... etc.
> ...
> ...
> amr_initialize.F90(734): (col. 9) remark: LOOP WAS VECTORIZED.
> amr_initialize.F90(735): (col. 9) remark: FUSED LOOP WAS VECTORIZED.
> amr_initialize.F90(737): (col. 9) remark: FUSED LOOP WAS VECTORIZED.
> amr_initialize.F90(741): (col. 9) remark: LOOP WAS VECTORIZED.
> amr_initialize.F90(742): (col. 9) remark: LOOP WAS VECTORIZED.
> amr_initialize.F90(838): (col. 7) remark: LOOP WAS VECTORIZED.
> amr_initialize.F90(839): (col. 7) remark: LOOP WAS VECTORIZED.
> gr_initParameshArrays.F90(78): (col. 12) remark: LOOP WAS VECTORIZED.
> gr_initParameshArrays.F90(78): (col. 12) remark: LOOP WAS VECTORIZED.
> Grid_dump.F90(156): (col. 11) remark: LOOP WAS VECTORIZED.
> PhysicalConstants_init.F90(127): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(130): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(133): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(136): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(139): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(142): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(145): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(148): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(151): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(154): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(157): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(160): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(165): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(167): (col. 8) remark: BLOCK WAS VECTORIZED.
> PhysicalConstants_init.F90(169): (col. 8) remark: BLOCK WAS VECTORIZED.
> Grid_init.F90(280): (col. 3) remark: LOOP WAS VECTORIZED.
> Grid_init.F90(375): (col. 3) remark: LOOP WAS VECTORIZED.
> Grid_init.F90(385): (col. 6) remark: LOOP WAS VECTORIZED.
> Particles_init.F90(108): (col. 3) remark: LOOP WAS VECTORIZED.
> Particles_init.F90(135): (col. 3) remark: LOOP WAS VECTORIZED.
> Particles_init.F90(182): (col. 6) remark: LOOP WAS VECTORIZED.
> Grid_initDomain.F90(96): (col. 11) remark: LOOP WAS VECTORIZED.
> Grid_initDomain.F90(114): (col. 20) remark: LOOP WAS VECTORIZED.
> Grid_initDomain.F90(117): (col. 12) remark: FUSED LOOP WAS VECTORIZED.
> Grid_initDomain.F90(124): (col. 17) remark: LOOP WAS VECTORIZED.
> Grid_initDomain.F90(133): (col. 17) remark: LOOP WAS VECTORIZED.
> Grid_initDomain.F90(136): (col. 14) remark: LOOP WAS VECTORIZED.
> Grid_initDomain.F90(171): (col. 12) remark: FUSED LOOP WAS VECTORIZED.
> Grid_initDomain.F90(189): (col. 14) remark: LOOP WAS VECTORIZED.
> Driver_verifyInitDt.F90(98): (col. 14) remark: LOOP WAS VECTORIZED.
> CosmologicalFunctions.F90(611): (col. 6) remark: LOOP WAS VECTORIZED.
> CosmologicalFunctions.F90(618): (col. 6) remark: LOOP WAS VECTORIZED.
> ld: skipping incompatible
> /home/users/seyit/Libraries/Hdf5-166/lib/libhdf5.so when searching for
> -lhdf5
> ld: skipping incompatible
> /home/users/seyit/Libraries/Hdf5-166/lib/libhdf5.a when searching for -lhdf5
> ld: cannot find -lhdf5
> make: *** [flash3] Error 1
>
>
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