[FLASH-USERS] Compilation error with Parallel HDF5 1.10.5

[Mattia Cipriani]

Dear Klaus,

thank you very much for the patch, which allowed to reach the end of the compilation.
However now, when I run the code, I get the following error, at the moment of outputting the first hdf5 file:
flash4: symbol lookup error: flash4: undefined symbol: H5Pset_fapl_mpio

Best regards,
Mattia

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  Dr Mattia Cipriani, PhD
    FSN-FUSPHY-SAD
    ENEA Centro Ricerche Frascati
    45, Via E. Fermi
    00044 Frascati (Rome)
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> Il giorno 08 mar 2019, alle ore 21:46, Klaus Weide <klaus at flash.uchicago.edu <mailto:klaus at flash.uchicago.edu>> ha scritto:
> 
> On Wed, 6 Mar 2019, Mattia Cipriani wrote:
> 
>> Dear FLASH Users,
>> 
>> I am compiling FLASH4.5 code by using OpenMPI 3.1.2 and HDF5 1.10.5, to take advantage of OpenMPI for parallel data output.
>> I have the following issue:
>> 
>> /usr/mpi/gcc730/openmpi-3.1.2/bin/mpicc -I/afs/enea.it/project/iner/SIMULAZIONI/software/build/hdf5/include <http://enea.it/project/iner/SIMULAZIONI/software/build/hdf5/include> -DH5_USE_16_API -I/afs/enea.it/project/iner/SIMULAZIONI/software/build/hypre/include <http://enea.it/project/iner/SIMULAZIONI/software/build/hypre/include> -ggdb -c -O2 -Wuninitialized -D_FORTIFY_SOURCE=2 -DFLASH_3T -DMAXBLOCKS=1000 -DNXB=16 -DNYB=16 -DNZB=1 -DN_DIM=2 io_h5_report_xfer_method.c
>> io_h5_report_xfer_method.c: In function ‘io_h5_report_xfer_method’:
>> io_h5_report_xfer_method.c:105:26: error: ‘H5D_MPIO_FILTERS’ undeclared (first use in this function)
>>       if (global_cause & H5D_MPIO_FILTERS) {
>>                          ^
>> io_h5_report_xfer_method.c:105:26: note: each undeclared identifier is reported only once for each function it appears in
>> make: *** [io_h5_report_xfer_method.o] Error 1
> 
> 
> To avoid this problem, apply the attached patch to the file
> 
> source/IO/IOMain/hdf5/io_h5_report_xfer_method.c
> 
> 
> Klaus<hdf5_1_10_addtl.diff>

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