[FLASH-USERS] Compilation Error in Sedov Example Problem

[Ryan Farber]

Hi Charles,

Thank you for attaching your SLURM submission script, as well as your
stdout.

Note the following lines from your stdout:
    checking sites Aliases file
    site directory for site gl3048.arc-ts.umich.edu not found;
    using prototype Linux

So the setup command generates a Makefile based on the Makefile.h in the
sites/Prototypes/Linux directory.
You then copied your Makefileh.h from sites to the object directory -- but
setup already ran so it's probably not used at all.

You should instead either place your Makefile.h inside of
Sites/Prototypes/Linux (to overwrite the default), create a directory sites/
gl3048.arc-ts.umich.edu (as well as one per compute node and login node,
gulp...), or modify the Aliases file.

Best wishes,
--------
Ryan


On Thu, Jul 18, 2024 at 12:04 PM Charles Peterson <chippete at umich.edu>
wrote:

> Hi Ryan,
>
> Thanks for the quick response! The error I posted above is the entire
> stream from the returned .err file. Below I've also attached the .out file
> and the Makefile.h that I used. I also reached out to UM HPC support and am
> currently waiting on a response from them. Thank you for the suggestion!
>
> Best,
> Chip
>
> On Tue, Jul 16, 2024 at 8:21 PM Ryan Farber <rjfarber at umich.edu> wrote:
>
>> Hi Chip,
>>
>> Your specific error I don’t believe I’ve encountered unfortunately. It
>> would be helpful if you can attach the full stderr stream (combined with
>> stdout is fine).
>>
>> Other useful information might be in your Makefile.h and your batch
>> script (if you’re compiling with “make -j” it’s possible the cluster is
>> killing your job for using too many resources if that’s running on a login
>> node.
>>
>> If you’re compiling on a computer node, that should be fine but might
>> depend on your cluster. If you’re on Great Lakes the note UM’s support is
>> pretty great, and should have some experience supporting new FLASH users.
>>
>> Best wishes,
>> Ryan
>>
>> Sent from my iPhone
>>
>> On Jul 16, 2024, at 5:45 PM, Charles Peterson <chippete at umich.edu> wrote:
>>
>> 
>> Hi flash users,
>>
>> I am a new user to FLASH and have been trying to run FLASH on my
>> University's HPC cluster (I'm also very new to using HPC's). The batch
>> script that I've been working with first loads the following modules:
>> <image.png>
>>
>> It then calls for the setup, compilation, and running of the Sedov
>> example problem. After running this batch script, the setup process is
>> successful, while an error is run into with running make:
>> <image.png>
>>
>> Would anyone have any suggestions on how to fix this? Any and all help is
>> greatly appreciated.
>>
>> Thanks!
>> Chip
>> --
>> *Charles (Chip) Peterson*
>> University of Michigan '25
>> Engineering Physics
>> Nuclear Engineering and Radiological Sciences
>> chippete at umich.edu - (253)-255-7090
>> _______________________________________________
>> flash-users mailing list
>> flash-users at flash.rochester.edu
>>
>> For list info, including unsubscribe:
>> https://flash.rochester.edu/mailman/listinfo/flash-users
>>
>>
>
> --
> *Charles (Chip) Peterson*
> University of Michigan '25
> Engineering Physics
> Nuclear Engineering and Radiological Sciences
> chippete at umich.edu - (253)-255-7090
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://flash.rochester.edu/pipermail/flash-users/attachments/20240718/102af53d/attachment.htm>