[FLASH-USERS] FLASH setup on stampede.tacc.utexas.edu

[Mark L Richardson]

Hey,
  for anyone else with the HDF5 issue, Matt swapped the order:

should be: -DH5_USE_16_API

Thanks Matt for pointing me in the right direction though!

Sorry I couldn't be more help, Suoqing. I'll play around with Sod as you
described and let you know if I have any issue.

-Mark



On Thu, Mar 28, 2013 at 2:18 PM, Suoqing Ji <Suoqing.Ji at asu.edu> wrote:

> Hi Mark,
>
> Thank you for your prompt response!
>
> Yes, as Turk mentioned, the flag -DUSE_H5_16_API should work for that.
> Thank Turk!
>
> But the problem I've met is that, I tried to compile Sod problem without
> IO unit. In single processor, it runs well, but when I use mpi, the program
> refused to go further after the runtime parameter reading. So I wonder
> there's some issue on mpi.
>
> Now I'm using module impi/4.1.0.030 on stampede.
>
> Best wishes,
> Suoqing
>
>
> On Mar 28, 2013, at 1:11 PM, Mark L Richardson wrote:
>
> I'm attempting to do the same. The issue I encountered is Stampede has
> HDF5.1.8 built, while Flash (at least v.3.2) is built with HDF1.6. Between
> 1.6 and 1.8 the API changed on subroutines like H5Dopen where it used to
> need 2 arguments but now it needs 3.
>
> One fix is to go through and change each H5Dopen to  H5Dopen1 which is the
> deprecated version, however there may be other issues that won't show
> themselves.
>
> The other, better, option is to build v. 1.6 on Stampede and link to those
> libraries (I am planning on doing this in the next day or so).
>
> Are these the same issues you were getting?
>
> -Mark
>
>
>
>
> On Thu, Mar 28, 2013 at 2:07 PM, Suoqing Ji <Suoqing.Ji at asu.edu> wrote:
>
>> Hi,
>>
>> I'm currently trying to setup FLASH on stampede.tacc.utexas.edu, but
>> encountered some errors.
>>
>> Is there anyone who has setup FLASH on stampede, and may I request the
>> configuration info as well as Makefile.h? It would be better if it's
>> FLASH4, and other versions are also valuable for reference.
>>
>> Thanks!
>>
>> Best wishes,
>> Suoqing
>>
>
>
>
> --
> Mark Richardson,
> Mark.L.Richardson at asu.edu
> Ph.D. Candidate: Astrophysics
> ISTB4 623
> School of Earth and Space Exploration
> Arizona State University
> 480 318-4449
> www.public.asu.edu/~mlricha4
>
>
>


-- 
Mark Richardson,
Mark.L.Richardson at asu.edu
Ph.D. Candidate: Astrophysics
ISTB4 623
School of Earth and Space Exploration
Arizona State University
480 318-4449
www.public.asu.edu/~mlricha4
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