Index

.dump_checkpoint@.dump_checkpoint|seeIO

.dump_restart@.dump_restart|seeIO

adaptive mesh

adiabatic indices

angular coordinates

block ,

boundary conditions

Burn

algebra@algebra ,

enucDtFactor@enucDtFactor ,

odeStepper@odeStepper ,

useBurnTable@useBurnTable

useShockBurn@useShockBurn

computational domain

Conductivity

useConductivity@useConductivity

Config@Config ,

Cosmology

CosmologicalConstant@CosmologicalConstant

MaxScaleChange@MaxScaleChange

OmegaMatter@OmegaMatter

OmegaRadiation@OmegaRadiation

diagnostics

ProtonEmission

ProtonEmission

ProtonImaging

ProtonImaging , ,

XrayImaging

XrayImaging

Diffuse

useDiffuse@useDiffuse ,

useDiffuseTherm@useDiffuseTherm

useDiffuseVisc@useDiffuseVisc

Docker

double precision

Driver

dr_numPosdefVars@dr_numPosdefVars

dr_usePosdefComputeDt@dr_usePosdefComputeDt

Driver_abortFlash , , ,

Driver_abortFlashC

Driver_computeDt , ,

Driver_evolveFlash , , , , , ,

Driver_finalizeFlash

Driver_getDt

Driver_getElapsedWCTime

Driver_getNStep

Driver_getSimTime

Driver_initFlash , , , , , , ,

Driver_initParallel

Driver_sendOutputData

Driver_verifyInitDt

dtinit@dtinit

dtmax@dtmax ,

dtmin@dtmin

meshCopyCount@meshCopyCount

nend@nend

restart@restart

tmax@tmax

tstep_change_factor@tstep_change_factor

energy deposition

energy deposition

laser: 3D ray tracing in 2D domain

laser: beam cross section power structure

laser: beam definition and setup

laser: Cell average algorithm

laser: Cubic interpolation with piecewise parabolic ray tracing

laser: Cubic interpolation with Runge Kutta integration

laser: energy density

laser: implementation details (algorithm) , ,

laser: power deposition

laser: proper beam placement ,

laser: pulse definition

laser: ray definition and setup , ,

laser: ray grid inside beam , , ,

laser: ray tracing in 3D cylindrical domains

laser: synchronous and asynchronous ray tracing

EnergyDeposition

ed_adjustBeamsTargetIntensity@ed_adjustBeamsTargetIntensity ,

ed_adjustBySymmetryX@ed_adjustBySymmetryX

ed_adjustBySymmetryY@ed_adjustBySymmetryY

ed_adjustBySymmetryZ@ed_adjustBySymmetryZ

ed_adjustInitialRaySpeed@ed_adjustInitialRaySpeed

ed_beamsCheckExpandX@ed_beamsCheckExpandX

ed_beamsCheckExpandY@ed_beamsCheckExpandY

ed_beamsCheckExpandZ@ed_beamsCheckExpandZ

ed_cellStepTolerance@ed_cellStepTolerance

ed_cellTimeEnergyDeposition@ed_cellTimeEnergyDeposition

ed_cellWallThicknessFactor@ed_cellWallThicknessFactor

ed_computeGradNeleP@ed_computeGradNeleP

ed_computeGradNeleR@ed_computeGradNeleR

ed_computeGradNeleT@ed_computeGradNeleT

ed_computeGradNeleX@ed_computeGradNeleX

ed_computeGradNeleY@ed_computeGradNeleY

ed_computeGradNeleZ@ed_computeGradNeleZ

ed_createRaysExpandX@ed_createRaysExpandX ,

ed_createRaysExpandY@ed_createRaysExpandY ,

ed_createRaysExpandZ@ed_createRaysExpandZ ,

ed_crossSectionFunctionType_n@ed_crossSectionFunctionType_n

ed_cubicInterpolationZeroDerv@ed_cubicInterpolationZeroDerv

ed_enforcePositiveNele@ed_enforcePositiveNele

ed_enforcePositiveTele@ed_enforcePositiveTele

ed_gaussianCenterMajor_n@ed_gaussianCenterMajor_n

ed_gaussianCenterMinor_n@ed_gaussianCenterMinor_n

ed_gaussianExponent_n@ed_gaussianExponent_n

ed_gaussianRadiusMajor_n@ed_gaussianRadiusMajor_n

ed_gaussianRadiusMinor_n@ed_gaussianRadiusMinor_n

ed_gradOrder@ed_gradOrder

ed_gridDeltaSemiAxisMajor_n@ed_gridDeltaSemiAxisMajor_n

ed_gridDeltaSemiAxisMinor_n@ed_gridDeltaSemiAxisMinor_n

ed_gridnAngularTics_n@ed_gridnAngularTics_n

ed_gridnRadialTics_n@ed_gridnRadialTics_n

ed_gridnSemiAxisMajorTics_n@ed_gridnSemiAxisMajorTics_n

ed_gridnSemiAxisMinorTics_n@ed_gridnSemiAxisMinorTics_n

ed_gridType_n@ed_gridType_n

ed_ignoreBoundaryCondition_n@ed_ignoreBoundaryCondition_n

ed_laser3Din2D@ed_laser3Din2D ,

ed_laser3Din2DwedgeAngle@ed_laser3Din2DwedgeAngle

ed_laserIOMaxNumberOfPositions@ed_laserIOMaxNumberOfPositions

ed_laserIOMaxNumberOfRays@ed_laserIOMaxNumberOfRays

ed_lensSemiAxisMajor_n@ed_lensSemiAxisMajor_n

ed_lensX_n@ed_lensX_n

ed_lensY_n@ed_lensY_n

ed_lensZ_n@ed_lensZ_n

ed_maxRayCount@ed_maxRayCount

ed_numberOfBeams@ed_numberOfBeams

ed_numberOfPulses@ed_numberOfPulses , , ,

ed_numberOfRays_n@ed_numberOfRays_n

ed_numberOfSections_n@ed_numberOfSections_n , ,

ed_power_n_i@ed_power_n_i

ed_powerStepTolerance@ed_powerStepTolerance

ed_printBeams@ed_printBeams

ed_printMain@ed_printMain

ed_printPulses@ed_printPulses

ed_printRays@ed_printRays

ed_pulseNumber_n@ed_pulseNumber_n

ed_rayZeroPower@ed_rayZeroPower

ed_RungeKuttaMethod@ed_RungeKuttaMethod

ed_saveOutOfDomainRays@ed_saveOutOfDomainRays

ed_semiAxisMajorTorsionAngle_n@ed_semiAxisMajorTorsionAngle_n

ed_semiAxisMajorTorsionAxis_n@ed_semiAxisMajorTorsionAxis_n

ed_targetSemiAxisMajor@ed_targetSemiAxisMajor , , ,

ed_targetSemiAxisMajor_n@ed_targetSemiAxisMajor_n

ed_targetSemiAxisMinor_n@ed_targetSemiAxisMinor_n

ed_targetX@ed_targetX

ed_targetX_n@ed_targetX_n

ed_targetY_n@ed_targetY_n

ed_targetZ_n@ed_targetZ_n

ed_time_n_i@ed_time_n_i

ed_useLaserIO@ed_useLaserIO

ed_useRayCoords2GetBlockID@ed_useRayCoords2GetBlockID

ed_velocityStepTolerance@ed_velocityStepTolerance

ed_wavelength_n@ed_wavelength_n

threadRayTrace@threadRayTrace

useEnergyDeposition@useEnergyDeposition

Eos

eintSwitch@eintSwitch ,

eos_coulumbMult@eos_coulumbMult

eos_maxNewton@eos_maxNewton

eos_singleSpeciesA@eos_singleSpeciesA ,

eos_singleSpeciesZ@eos_singleSpeciesZ ,

eos_tolerance@eos_tolerance

eosModeInit@eosModeInit , ,

gamma@gamma , , , ,

gammaEle@gammaEle

gammaIon@gammaIon

gammaRad@gammaRad

eos_specSesDblFmt@eos_specSesDblFmt

equation of state ,

equation of state

Eos@Eos

Eos_wrapped@Eos_wrapped

gamma-law

equation of state

,

Helmholtz ,

multi-gamma ,

rhd-gamma

fidlr@fidlr

xflash3@xflash3

FIXEDBLOCKSIZE mode , ,

Flash.h

flash.par@flash.par , , ,

FLASH_MPI1

flux conservation

geometry|seemesh

gmake@gmake

Makefile.h@Makefile.h

gmake@gmake

,

Gravity

grav_boundary_type@grav_boundary_type

grav_boundary_type@grav_boundary_type , , , ,

grav_boundary_type_x@grav_boundary_type_x

grav_boundary_type_x@grav_boundary_type_x

grav_boundary_type_y@grav_boundary_type_y

grav_boundary_type_y@grav_boundary_type_y

grav_boundary_type_z@grav_boundary_type_z

grav_boundary_type_z@grav_boundary_type_z

grv_bhAccErr@grv_bhAccErr

grv_bhAccErr@grv_bhAccErr , ,

grv_bhEwaldAlwaysGenerate@grv_bhEwaldAlwaysGenerate

grv_bhEwaldFieldNxV42@grv_bhEwaldFieldNxV42

grv_bhEwaldFieldNxV42@grv_bhEwaldFieldNxV42

grv_bhEwaldFieldNyV42@grv_bhEwaldFieldNyV42

grv_bhEwaldFieldNyV42@grv_bhEwaldFieldNyV42

grv_bhEwaldFieldNzV42@grv_bhEwaldFieldNzV42

grv_bhEwaldFieldNzV42@grv_bhEwaldFieldNzV42

grv_bhEwaldFName@grv_bhEwaldFName

grv_bhEwaldFNameAccV42@grv_bhEwaldFNameAccV42

grv_bhEwaldFNamePotV42@grv_bhEwaldFNamePotV42

grv_bhEwaldNPer@grv_bhEwaldNPer

grv_bhEwaldNPer@grv_bhEwaldNPer

grv_bhEwaldNRefV42@grv_bhEwaldNRefV42

grv_bhEwaldNRefV42@grv_bhEwaldNRefV42 ,

grv_bhEwaldSeriesN@grv_bhEwaldSeriesN

grv_bhEwaldSeriesN@grv_bhEwaldSeriesN

grv_bhExtrnPotCenterX@grv_bhExtrnPotCenterX

grv_bhExtrnPotCenterX@grv_bhExtrnPotCenterX

grv_bhExtrnPotCenterY@grv_bhExtrnPotCenterY

grv_bhExtrnPotCenterY@grv_bhExtrnPotCenterY

grv_bhExtrnPotCenterZ@grv_bhExtrnPotCenterZ

grv_bhExtrnPotCenterZ@grv_bhExtrnPotCenterZ

grv_bhExtrnPotFile@grv_bhExtrnPotFile

grv_bhExtrnPotFile@grv_bhExtrnPotFile

grv_bhExtrnPotType@grv_bhExtrnPotType

grv_bhExtrnPotType@grv_bhExtrnPotType

grv_bhLinearInterpolOnlyV42@grv_bhLinearInterpolOnlyV42

grv_bhLinearInterpolOnlyV42@grv_bhLinearInterpolOnlyV42

grv_bhMAC@grv_bhMAC

grv_bhMAC@grv_bhMAC

grv_bhMPDegree@grv_bhMPDegree

grv_bhMPDegree@grv_bhMPDegree

grv_bhNewton@grv_bhNewton

grv_bhNewton@grv_bhNewton

grv_bhUseExternalPotential@grv_bhUseExternalPotential

grv_bhUsePoissonPotential@grv_bhUsePoissonPotential

grv_bhUseRelAccErr@grv_bhUseRelAccErr

grv_bhUseRelAccErr@grv_bhUseRelAccErr ,

grv_useExternalPotential@grv_useExternalPotential

useGravity@useGravity

grid

boundary|seeboundary conditions

Grid

convertToConsvdForMeshCalls@convertToConsvdForMeshCalls , , ,

convertToConsvdInMeshInterp@convertToConsvdInMeshInterp , , , ,

grid

data averaging ,

Grid

derefine_cutoff_#@derefine_cutoff_#

eosMode@eosMode

eosModeInit@eosModeInit

flux_correct@flux_correct

geometry@geometry , ,

gr_bhPhysMACComm@gr_bhPhysMACComm , , ,

gr_bhPhysMACTW@gr_bhPhysMACTW , , ,

gr_bhTreeLimAngle@gr_bhTreeLimAngle ,

gr_bhTreeSafeBox@gr_bhTreeSafeBox , ,

gr_bhTWMaxQueueSize@gr_bhTWMaxQueueSize

gr_bhUnifiedTreeWalk@gr_bhUnifiedTreeWalk

gr_bhUseUnifiedTW@gr_bhUseUnifiedTW ,

gr_lrefineMaxRedDoByLogR@gr_lrefineMaxRedDoByLogR

gr_lrefineMaxRedDoByTime@gr_lrefineMaxRedDoByTime

gr_lrefineMaxRedLogBase@gr_lrefineMaxRedLogBase

gr_lrefineMaxRedRadiusFact@gr_lrefineMaxRedRadiusFact

gr_lrefineMaxRedTimeScale@gr_lrefineMaxRedTimeScale

gr_lrefineMaxRedTRef@gr_lrefineMaxRedTRef

gr_pfftDiffOpDiscretize@gr_pfftDiffOpDiscretize

gr_pmrpForceConsistency@gr_pmrpForceConsistency

Grid_advanceDiffusion

Grid_applyBCEdge , ,

Grid_applyBCEdgeAllUnkVars , , ,

Grid_bcApplyToRegion , , ,

Grid_bcApplyToRegionSpecialized , , , ,

Grid_conserveFluxes

Grid_fillGuardCells , , , , , , , ,

Grid_getBlkBoundBox

Grid_getBlkCenterCoords , ,

Grid_getBlkCornerID ,

Grid_getBlkData , , ,

Grid_getBlkIndexLimits ,

Grid_getBlkPhysicalSize , ,

Grid_getBlkPtr

Grid_getBlkRefineLevel

Grid_getBlkType

Grid_getBlPtr

Grid_getCellCoords , , ,

Grid_getDeltas

Grid_getGeometry

Grid_getListOfBlocks ,

Grid_getPlaneData ,

Grid_getPointData ,

Grid_getRowData ,

Grid_getSingleCellVol

Grid_init , ,

Grid_initDomain ,

Grid_mapParticlesToMesh ,

Grid_markRefineDerefine , ,

Grid_markRefineSpecialized

Grid_pfft

Grid_pfftFinalize

Grid_pfftInit

Grid_putBlkData ,

Grid_restrictAllLevels

Grid_sendOutputData , ,

Grid_solvePoisson

Grid_updateRefinement , , ,

grid

guardcells|seeguardcells

Grid

iGridSize@iGridSize

interpol_order@interpol_order ,

grid

interpolation , , , , , , ,

interpolation

order

Grid

jGridSize@jGridSize

kGridSize@kGridSize

lrefine_max@lrefine_max

max_particles_per_blk@max_particles_per_blk

mg_maxCorrections@mg_maxCorrections

mg_MaxResidualNorm@mg_MaxResidualNorm

mg_printNorm@mg_printNorm

mpole_2DSymmetryPlane@mpole_2DSymmetryPlane ,

mpole_3DAxisymmetry@mpole_3DAxisymmetry ,

mpole_DumpMoments@mpole_DumpMoments ,

mpole_IgnoreInnerZone@mpole_IgnoreInnerZone ,

mpole_InnerZoneResolution@mpole_InnerZoneResolution ,

mpole_InnerZoneSize@mpole_InnerZoneSize ,

mpole_Lmax@mpole_Lmax , , , ,

mpole_MaxRadialZones@mpole_MaxRadialZones ,

mpole_PrintRadialInfo@mpole_PrintRadialInfo ,

mpole_subSample@mpole_subSample

mpole_ZoneExponent_n@mpole_ZoneExponent_n ,

mpole_ZoneRadiusFraction_n@mpole_ZoneRadiusFraction_n ,

mpole_ZoneScalar_n@mpole_ZoneScalar_n ,

mpole_ZoneType_n@mpole_ZoneType_n ,

Nblockx@Nblockx , ,

Nblocky@Nblocky , ,

Nblockz@Nblockz ,

pfft_setupOnce@pfft_setupOnce ,

grid

prolongation ,

Grid

refine_cutoff_#@refine_cutoff_#

refine_filter_#@refine_filter_#

refine_on_particle_count@refine_on_particle_count

refine_var_#@refine_var_# ,

grid

restriction , ,

Grid

smlrho@smlrho

tagradius@tagradius

xl_boundary_type@xl_boundary_type , ,

xmax@xmax , ,

grid

xmin/xmax@xmin/xmax

Grid

xmin@xmin ,

xr_boundary_type@xr_boundary_type

ymax@ymax , ,

grid

ymin/ymax@ymin/ymax

Grid

ymin@ymin ,

zmax@zmax

grid

zmin/zmax@zmin/zmax

Grid

zmin@zmin

Grid_getCellCoords@Grid_getCellCoords

guardcells

H5_USE_16_API@H5_USE_16_API ,

HDF5|seeIO

Hydro

CFL@CFL , ,

chomboLikeUpdateSoln@chomboLikeUpdateSoln

hy_cflFallbackFactor@hy_cflFallbackFactor

hy_eosModeAfter@hy_eosModeAfter ,

hybrid_riemann@hybrid_riemann

HydroMain@HydroMain

ppm_modifystates@ppm_modifystates

use_avisc@use_avisc

use_cma_flattening@use_cma_flattening

use_steepening@use_steepening

I/O

IDL

incompressible

IO

.dump_checkpoint@.dump_checkpoint

.dump_particle_file@.dump_particle_file

.dump_plotfile@.dump_plotfile

.dump_restart@.dump_restart

alwaysComputeUserVars@alwaysComputeUserVars

alwaysRestrictCheckpoint@alwaysRestrictCheckpoint

checkpoint file

checkpointFileIntervalStep@checkpointFileIntervalStep

checkpointFileNumber@checkpointFileNumber

chkGuardCellsInput@chkGuardCellsInput

chkGuardCellsOutput@chkGuardCellsOutput

forced Plotfile

HDF5 ,

IO_getPrevScalar

IO_getScalar

IO_init ,

IO_output , ,

IO_readUserArray

IO_setScalar ,

IO_writeCheckpoint ,

IO_writeIntegralQuantities ,

IO_writeParticles

IO_writePlotfile ,

IO_writeUserArray

output file names

outputSplitNum@outputSplitNum

particle file

particleFileNumber@particleFileNumber

plot_grid_var_1@plot_grid_var_1

plot_grid_var_2@plot_grid_var_2

plot_var_1@plot_var_1

plot_var_2@plot_var_2

plotfile

plotFileNumber@plotFileNumber ,

Ionize

dneimax@dneimax

dneimin@dneimin

tneimax@tneimax

tneimin@tneimin

kernel

Logfile

log_file@log_file

make@gmake

make realclean@make realclean

make@make

gmake clean@make clean

make@make

parallel build

Makefile.h

materials

viscosity|seeviscosity

MAXBLOCKS@MAXBLOCKS ,

memory , ,

mesh

geometry

geometry

Cartesian

CARTESIAN@CARTESIAN

cylindrical

CYLINDRICAL@CYLINDRICAL

polar

POLAR@POLAR

spherical

SPHERICAL@SPHERICAL

refinement criteria

monitors

Logfile

Logfile_init

Logfile_stamp , , ,

Logfile_stampMessage

Logfile_writeSummary

Timers

Timers_create ,

Timers_getSummary

Timers_init

Timers_reset , ,

Timers_start

Timers_stop

Multispecies

Multispecies_getAvg

Multispecies_getProperty

Multispecies_getSum

Multispecies_getSumFrac

Multispecies_getSumInv

Multispecies_getSumSqr

Multispecies_list

Multispecies_setProperty

Multispecies_unitTest

Navier-Stokes

NONFIXEDBLOCKSIZE mode , , , , ,

Opacity

op_absorbScale@op_absorbScale

op_emitScale@op_emitScale

op_transScale@op_transScale

PARAMESH ,

Particles

initializeParticleAtRestart@initializeParticleAtRestart

particle_attribute_1@particle_attribute_1

particle_attribute_2@particle_attribute_2

Particles_advance , , , , ,

Particles_computeDt

Particles_dump

Particles_init

Particles_initPositions ,

Particles_mapToMeshOneBlk

Particles_specifyMethods ,

Particles_unitTest

Particles_updateAttributes ,

pt_dtChangeToleranceDown@pt_dtChangeToleranceDown

pt_dtChangeToleranceUp@pt_dtChangeToleranceUp

pt_dtFactor@pt_dtFactor

pt_initialXMin@pt_initialXMin

pt_numX@pt_numX ,

pt_numy@pt_numy

pt_picPpc_1@pt_picPpc_1

useParticles@useParticles

Physical Constants

Physical Constants

CGS,CGS

MKS,MKS

PhysicalConstants

pc_unitsBase@pc_unitsBase

PhysicalConstants_get

PhysicalConstants_init ,

PhysicalConstants_list

PhysicalConstants_listUnits

PhysicalConstants_unitTest ,

physics

Cosmology

Cosmology_cdmPowerSpectrum

Cosmology_computeDeltaCrit

Cosmology_computeDt

Cosmology_computeVariance

Cosmology_getRedshift

Cosmology_massToLength

Cosmology_redshiftToTime

Cosmology_solveFriedmannEqn

Diffuse

Diffuse_solveScalar

Diffuse_therm

Eos

Eos , , , , , , , , , , , , ,

Eos_getData

Eos_init ,

Eos_putData

Eos_wrapped , , , , , , , ,

EosMain

Tabulated

eos_tabEditSesameTables.F90 , ,

eos_tabReadSesameTables.F90 , ,

Gravity

Gravity_accelOneRow , ,

Gravity_bhFillBotNode

Gravity_bhNodeContrib ,

Gravity_init

Gravity_potentialListOfBlocks

Hydro

Hydro_computeDt

materialProperties

Conductivity

Conductivity

Opacity

Opacity ,

RadTrans

RadTrans_mgdEFromT

RadTrans_sumEnergy

sourceTerms

Burn

Burn

Burn_computeDt

Burn_init

EnergyDeposition

EnergyDeposition

EnergyDeposition

utilities

PlasmaState

PlasmaStateMain

PlasmaState_getComposition

PlasmaState_ieEquilTime

PlasmaState_logLambda

PlasmaState_tau

proton emission

proton emission

proton detector screens

proton emission boxes

proton generation

proton imaging

proton imaging

implementation details (algorithm)

proton imaging: beam definition and setup

proton imaging: detector screen setup

proton imaging: moving protons through domain

proton imaging: proton definition and setup

proton imaging: proton specifications

proton imaging: recording protons on detector screen

proton imaging: time resolved proton imaging

ProtonEmission

pem_appendOldDetectorFiles@pem_appendOldDetectorFiles

pem_cellStepTolerance@pem_cellStepTolerance

pem_cellWallThicknessFactor@pem_cellWallThicknessFactor

pem_detailedTiming@pem_detailedTiming

pem_detectorCenter[X,Y,Z]_n@pem_detectorCenter[X,Y,Z]_n

pem_detectorFileNameTimeStamp@pem_detectorFileNameTimeStamp

pem_detectorNormal[X,Y,Z]_n@pem_detectorNormal[X,Y,Z]_n

pem_detectorPinholeDist2Det_n@pem_detectorPinholeDist2Det_n

pem_detectorPinholeRadius_n@pem_detectorPinholeRadius_n

pem_detectorSideLength_n@pem_detectorSideLength_n

pem_detectorSideTiltingAngle_n@pem_detectorSideTiltingAngle_n

pem_detectorSideTiltingAxis_n@pem_detectorSideTiltingAxis_n

pem_detectorXYwriteFormat@pem_detectorXYwriteFormat

pem_emissionAmplificationFactor@pem_emissionAmplificationFactor

pem_emissionBoxCornerL[X,Y,Z]_n@pem_emissionBoxCornerL[X,Y,Z]_n

pem_emissionBoxCornerU[X,Y,Z]_n@pem_emissionBoxCornerU[X,Y,Z]_n

pem_emissionConeCenter[X,Y,Z]@pem_emissionConeCenter[X,Y,Z]

pem_emissionConeHalfApexAngle@pem_emissionConeHalfApexAngle

pem_ignoreElectricalField@pem_ignoreElectricalField

pem_ignoreMagneticField@pem_ignoreMagneticField

pem_maxProtonCount@pem_maxProtonCount

pem_numberOfDetectors@pem_numberOfDetectors

pem_numberOfEmissionBoxes@pem_numberOfEmissionBoxes

pem_opaqueBoundaries@pem_opaqueBoundaries

pem_printDetectors@pem_printDetectors

pem_printMain@pem_printMain

pem_printProtons@pem_printProtons

pem_printProtonSources@pem_printProtonSources

pem_protonDeterminism@pem_protonDeterminism

pem_RungeKuttaMethod@pem_RungeKuttaMethod

pem_screenProtonBucketSize@pem_screenProtonBucketSize

pem_useParabolicApproximation@pem_useParabolicApproximation

threadProtonTrace@threadProtonTrace

useProtonEmission@useProtonEmission

ProtonImaging

pi_beamApertureAngle_n@pi_beamApertureAngle_n

pi_beamCapsule[X,Y,Z]_n@pi_beamCapsule[X,Y,Z]_n

pi_beamCapsuleRadius_n@pi_beamCapsuleRadius_n

pi_beamDetector_n@pi_beamDetector_n

pi_beamNoBoundaryCondition_n@pi_beamNoBoundaryCondition_n

pi_beamNumberOfProtons_n@pi_beamNumberOfProtons_n

pi_beamProtonEnergy_n@pi_beamProtonEnergy_n

pi_beamTarget[X,Y,Z]_n@pi_beamTarget[X,Y,Z]_n

pi_beamTime2Launch_n@pi_beamTime2Launch_n

pi_cellStepTolerance@pi_cellStepTolerance

pi_cellWallThicknessFactor@pi_cellWallThicknessFactor

pi_detectorAlignWRTbeamNr_n@pi_detectorAlignWRTbeamNr_n

pi_detectorCenter[X,Y,Z]_n@pi_detectorCenter[X,Y,Z]_n

pi_detectorDGwriteFormat@pi_detectorDGwriteFormat

pi_detectorDist2BeamCapsule_n@pi_detectorDist2BeamCapsule_n

pi_detectorFileNameTimeStamp@pi_detectorFileNameTimeStamp

pi_detectorNormal[X,Y,Z]_n@pi_detectorNormal[X,Y,Z]_n

pi_detectorPinholeDist2Det_n@pi_detectorPinholeDist2Det_n

pi_detectorPinholeRadius_n@pi_detectorPinholeRadius_n

pi_detectorSideLength_n@pi_detectorSideLength_n

pi_detectorSideTiltingAngle_n@pi_detectorSideTiltingAngle_n

pi_detectorSideTiltingAxis_n@pi_detectorSideTiltingAxis_n

pi_detectorXYwriteFormat@pi_detectorXYwriteFormat

pi_flagDomainMissingProtons@pi_flagDomainMissingProtons

pi_ignoreElectricalField@pi_ignoreElectricalField

pi_IOaddDetectorScreens@pi_IOaddDetectorScreens

pi_IOaddProtonsCapsule2Domain@pi_IOaddProtonsCapsule2Domain

pi_IOaddProtonsDomain2Screen@pi_IOaddProtonsDomain2Screen

pi_IOmaxBlockCrossingNumber@pi_IOmaxBlockCrossingNumber

pi_IOnumberOfProtons2Plot@pi_IOnumberOfProtons2Plot

pi_maxProtonCount@pi_maxProtonCount

pi_numberOfBeams@pi_numberOfBeams

pi_numberOfDetectors@pi_numberOfDetectors

pi_opaqueBoundaries@pi_opaqueBoundaries

pi_printBeams@pi_printBeams

pi_printDetectors@pi_printDetectors

pi_printMain@pi_printMain

pi_printProtons@pi_printProtons

pi_protonDeterminism@pi_protonDeterminism

pi_recordOffScreenProtons@pi_recordOffScreenProtons

pi_relativisticTracing@pi_relativisticTracing

pi_RungeKuttaMethod@pi_RungeKuttaMethod

pi_screenProtonBucketSize@pi_screenProtonBucketSize

pi_screenProtonDiagnostics@pi_screenProtonDiagnostics

pi_timeResolvedProtonImaging@pi_timeResolvedProtonImaging

pi_useIOprotonPlot@pi_useIOprotonPlot

pi_useParabolicApproximation@pi_useParabolicApproximation

threadProtonTrace@threadProtonTrace

useProtonImaging@useProtonImaging

RadTrans

rt_mgdFlCoef@rt_mgdFlCoef

rt_mgdFlMode@rt_mgdFlMode

rt_mgdNumGroups@rt_mgdNumGroups ,

rt_planckIntMethod@rt_planckIntMethod ,

rt_useMGD@rt_useMGD

Runge Kutta

RuntimeParameters

RuntimeParameters_get ,

RuntimeParameters_getPrev

RuntimeParameters_mapStrToInt ,

RuntimeParameters_set

sedov.dat@sedov.dat

sedov.log@sedov.log

setup

+default

-[123]d@\tt -[123]d

-append-parfiles@\tt -append-parfiles

-auto@\tt -auto

-cmake@\tt -cmake

-curvilinear@\tt -curvilinear

-debug@\tt -debug

-defines@\tt -defines

-fbs@\tt -fbs

-geometry@\tt -geometry

-gridinterpolation@-gridinterpolation

-gridinterpolation@\tt -gridinterpolation

-index-reorder@\tt -index-reorder

-library@\tt -library

-makefile@\tt -makefile

-makehide@\tt -makehide

-maxblocks@\tt -maxblocks

-n[xyz]b@\tt -n[xyz]b

-noclobber@\tt -noclobber

-nofbs@\tt -nofbs

-objdir@\tt -objdir

-opt@\tt -opt

-os@\tt -os

-parfile@\tt -parfile

-particlemethods-@-particlemethods

-portable@\tt -portable

-pyparfile@\tt -parfile

-site@\tt -site

-tau@\tt -tau

-test@\tt -test

-unit@\tt -unit

-unitsfile@\tt -unitsfile

-verbose@\tt -verbose

-with-library@\tt -with-library

-with-unit@\tt -with-unit

-without-library@\tt -without-library

-without-unit@\tt -without-unit

3t@\tt 3t

8wave@\tt 8wave

cartesian@\tt cartesian

chombo_amr@\tt chombo_amr

chombo_ug@\tt chombo_ug

cppapi@\tt cppapi

cube16@\tt cube16

cube32@\tt cube32

cube64@\tt cube64

curv-pm2@\tt curv-pm2

curvilinear@\tt curvilinear

cylindrical@\tt cylindrical

default@\tt default

ed_maxBeams@\tt ed_maxBeams

ed_maxPulses@\tt ed_maxPulses

fixedBlockSize@\tt fixedBlockSize

gravMgrid@\tt gravMgrid

gravMpole@\tt gravMpole

gravPfftNofbs@\tt gravPfftNofbs

Grid@\tt Grid ,

GridIndexOrder@\tt GridIndexOrder

hdf5@\tt hdf5

hdf5TypeIO@\tt hdf5TypeIO

IO@\tt IO ,

laser@\tt laser

longrange@\tt longrange

maxBlocks@\tt maxBlocks

mgd@\tt mgd

mgd_meshgroups@\tt mgd_meshgroups

mpi1@\tt mpi1

mpi2@\tt mpi2

mpole@\tt mpole

Mtmmmt@\tt Mtmmmt ,

nDim@\tt nDim

newMpole@\tt newMpole

noDefaultMpole@\tt noDefaultMpole

nofbs@\tt nofbs

noio@\tt noio

nolog@\tt nolog

noMgrid@\tt noMgrid

npg@\tt npg

nxb@\tt nxb

nyb@\tt nyb

nzb@\tt nzb

parallelIO@\tt parallelIO ,

ParameshLibraryMode@\tt ParameshLibraryMode

PfftSolver@\tt PfftSolver

pic@\tt pic

pm2@\tt pm2

pm3@\tt pm3

pm40@\tt pm40

pm4dev@\tt pm4dev

pm4dev_clean@\tt pm4dev_clean

pnetcdf@\tt pnetcdf

pnetcdfTypeIO@\tt pnetcdfTypeIO

polar@\tt polar

ptdens@\tt ptdens

ptio@\tt ptio

pureHydro@\tt pureHydro

python@\tt python

rnf@\tt rnf

serialIO@\tt serialIO

shortcuts ,

species@\tt species

spherical-pm2@\tt spherical-pm2

spherical@\tt spherical

SplitDriver@\tt SplitDriver

splitHydro@\tt splitHydro

supportPPMUpwind@\tt supportPPMUpwind

threadEosWithinBlock@\tt threadEosWithinBlock

threadHydroBlockList@\tt threadHydroBlockList

threadHydroWithinBlock@\tt threadHydroWithinBlock

threadMpoleBlockList@\tt threadMpoleBlockList

threadMpoleWithinBlock@\tt threadMpoleWithinBlock

threadRayTrace@\tt threadRayTrace

ug@\tt ug

uhd3t@\tt uhd3t

uhd@\tt uhd

unsplitHydro@\tt unsplitHydro

usm3t@\tt usm3t

usm@\tt usm

setup@setup ,

setup_params@setup_params

setups

example

sedov

shortcuts

Simulation

sim_maxTolCoeff0@sim_maxTolCoeff0

sim_maxTolCoeff1@sim_maxTolCoeff1

sim_maxTolCoeff2@sim_maxTolCoeff2

sim_schemeOrder@sim_schemeOrder

sim_smlRho@sim_smlRho

Simulation_adjustEvolution

Simulation_defineDomain , , , ,

Simulation_getVarnameType

Simulation_init ,

Simulation_initBlock , , ,

Simulation_initSpecies , , , ,

Simulation_mapIntToStr

Simulation_mapParticlesVar

Simulation_mapStrToInt

Simulation_data@Simulation_data

Simulation_init@Simulation_init

Simulation_initBlock@Simulation_initBlock ,

Simulation_initBlock@Simulation_initBlock

creating new

Stir

st_computeDt@st_computeDt ,

st_decay@st_decay

st_energy@st_energy

st_infilename@st_infilename ,

useStir@useStir

subunit

subunit

primary

Thomson scattering

Thomson scattering

laser: pulse definition

Thomson scattering: beam definition and setup

Thomson scattering: detector setup

Thomson scattering: ray definition and setup

Thomson scattering: ray specifications

Thomson scattering: recording rays at detector

ThomsonScattering

Beam Runtime Parameters@Beam Runtime Parameters

Detector Runtime Parameters@Detector Runtime Parameters

threadThscRayTrace@threadThscRayTrace

thsc_beamDetector_n@thsc_beamDetector_n

thsc_beamLens[X,Y,Z]_n@thsc_beamLens[X,Y,Z]_n

thsc_beamTarget[X,Y,Z]_n@thsc_beamTarget[X,Y,Z]_n

thsc_cellTimeEnergyDeposition@thsc_cellTimeEnergyDeposition

thsc_cellWallThicknessFactor@thsc_cellWallThicknessFactor

thsc_detectorApertureAngle_n@thsc_detectorApertureAngle_n ,

thsc_detectorCenter[X,Y,Z]_n@thsc_detectorCenter[X,Y,Z]_n

thsc_detectorDGwriteFormat@thsc_detectorDGwriteFormat

thsc_detectorFileNameTimeStamp@thsc_detectorFileNameTimeStamp

thsc_detectorLaserBeamNumber_n@thsc_detectorLaserBeamNumber_n

thsc_detectorLensSAMajor_n@thsc_detectorLensSAMajor_n

thsc_detectorLensX_n@thsc_detectorLensX_n

thsc_detectorLensY_n@thsc_detectorLensY_n

thsc_detectorLensZ_n@thsc_detectorLensZ_n

thsc_detectorNoRayDeflection_n@thsc_detectorNoRayDeflection_n

thsc_detectorNoRayPowerLoss_n@thsc_detectorNoRayPowerLoss_n

thsc_detectorNumberOfRays_n@thsc_detectorNumberOfRays_n

thsc_detectorNumberOfSpecPoints_n@thsc_detectorNumberOfSpecPoints_n

thsc_detectorSAMajorTorsionAngle_n@thsc_detectorSAMajorTorsionAngle_n

thsc_detectorSAMajorTorsionAxis_n@thsc_detectorSAMajorTorsionAxis_n

thsc_detectorScreenSpectralFlux_n@thsc_detectorScreenSpectralFlux_n

thsc_detectorScreenWavelengths_n@thsc_detectorScreenWavelengths_n

thsc_detectorSideLength_n@thsc_detectorSideLength_n

thsc_detectorSkipTimeResolve_n@thsc_detectorSkipTimeResolve_n

thsc_detectorTarget[X,Y,Z]_n@thsc_detectorTarget[X,Y,Z]_n

thsc_detectorTargetRadius_n@thsc_detectorTargetRadius_n

thsc_detectorTargetSAMajor_n@thsc_detectorTargetSAMajor_n

thsc_detectorTargetSAMinor_n@thsc_detectorTargetSAMinor_n

thsc_detectorTargetX_n@thsc_detectorTargetX_n

thsc_detectorTargetY_n@thsc_detectorTargetY_n

thsc_detectorTargetZ_n@thsc_detectorTargetZ_n

thsc_detectorUseRelativityTerm_n@thsc_detectorUseRelativityTerm_n

thsc_detectorWavelengthMax_n@thsc_detectorWavelengthMax_n

thsc_detectorWavelengthMin_n@thsc_detectorWavelengthMin_n

thsc_detectorWriteFormatX@thsc_detectorWriteFormatX

thsc_detectorWriteFormatY@thsc_detectorWriteFormatY

thsc_detectorXYwriteFormat@thsc_detectorXYwriteFormat

thsc_enforcePositiveNele@thsc_enforcePositiveNele

thsc_enforcePositiveTele@thsc_enforcePositiveTele

thsc_laserCrossSecFuncType_n@thsc_laserCrossSecFuncType_n

thsc_laserGaussCenterMajor_n@thsc_laserGaussCenterMajor_n

thsc_laserGaussCenterMinor_n@thsc_laserGaussCenterMinor_n

thsc_laserGaussExponent_n@thsc_laserGaussExponent_n

thsc_laserGaussRadiusMajor_n@thsc_laserGaussRadiusMajor_n

thsc_laserGaussRadiusMinor_n@thsc_laserGaussRadiusMinor_n

thsc_laserInitialRaySpeed_n@thsc_laserInitialRaySpeed_n

thsc_laserLensSAMajor_n@thsc_laserLensSAMajor_n

thsc_laserLensX_n@thsc_laserLensX_n

thsc_laserLensY_n@thsc_laserLensY_n

thsc_laserLensZ_n@thsc_laserLensZ_n

thsc_laserNoEnergyDeposition_n@thsc_laserNoEnergyDeposition_n

thsc_laserNumberOfRays_n@thsc_laserNumberOfRays_n

thsc_laserPolarizationAngle_n@thsc_laserPolarizationAngle_n

thsc_laserPulseNumber_n@thsc_laserPulseNumber_n

thsc_laserSAMajorTorsionAngle_n@thsc_laserSAMajorTorsionAngle_n

thsc_laserSAMajorTorsionAxis_n@thsc_laserSAMajorTorsionAxis_n

thsc_laserTargetSAMajor_n@thsc_laserTargetSAMajor_n

thsc_laserTargetSAMinor_n@thsc_laserTargetSAMinor_n

thsc_laserTargetX_n@thsc_laserTargetX_n

thsc_laserTargetY_n@thsc_laserTargetY_n

thsc_laserTargetZ_n@thsc_laserTargetZ_n

thsc_laserWavelength_n@thsc_laserWavelength_n

thsc_maxRayCount@thsc_maxRayCount , ,

thsc_numberOfBeams@thsc_numberOfBeams

thsc_numberOfDetectors@thsc_numberOfDetectors ,

thsc_numberOfLaserBeams@thsc_numberOfLaserBeams

thsc_numberOfPulses@thsc_numberOfPulses , , ,

thsc_numberOfSections_n@thsc_numberOfSections_n , ,

thsc_power_n_i@thsc_power_n_i

thsc_printBeams@thsc_printBeams

thsc_printDetectors@thsc_printDetectors ,

thsc_printEnergyInfo@thsc_printEnergyInfo

thsc_printLaserBeams@thsc_printLaserBeams

thsc_printMain@thsc_printMain ,

thsc_printPulses@thsc_printPulses ,

thsc_printRays@thsc_printRays

thsc_printSpecies@thsc_printSpecies

thsc_rayDeterminism@thsc_rayDeterminism

thsc_rayZeroPower@thsc_rayZeroPower

thsc_recordOffScreenRays@thsc_recordOffScreenRays

thsc_screenRayBucketSize@thsc_screenRayBucketSize

thsc_screenRayDiagnostics@thsc_screenRayDiagnostics

thsc_spectrumFileIntervalStep@thsc_spectrumFileIntervalStep ,

thsc_spectrumFileIntervalTime@thsc_spectrumFileIntervalTime ,

thsc_spectrumNpts_N@thsc_spectrumNpts_N

thsc_time_n_i@thsc_time_n_i

useThomsonScattering@useThomsonScattering ,

Timers

eachProcWritesSummary@eachProcWritesSummary

writeStatSummary@writeStatSummary

Turb

turb_c2@turb_c2

turb_stepSize@turb_stepSize

unit

variable type

variable

type

conserved

mass-specific

viscosity

viscosity

spitzer

Viscosity

useViscosity@useViscosity

visc_whichCoefficientIsConst@visc_whichCoefficientIsConst

XFLASH_DIR@XFLASH3_DIR

xray imaging

xray imaging

implementation details (algorithm)

xray imaging: detector screen setup and recording

xray imaging: X-ray definition

XrayImaging

threadXrayTrace@threadXrayTrace

useXrayImaging@useXrayImaging

xray_3Din2D@xray_3Din2D

xray_cellWallThicknessFactor@xray_cellWallThicknessFactor

xray_detectorAlignWRTorigin_n@xray_detectorAlignWRTorigin_n

xray_detectorCenter[X,Y,Z]_n@xray_detectorCenter[X,Y,Z]_n

xray_detectorDGwriteFormat@xray_detectorDGwriteFormat

xray_detectorEnergy_n_Fraction_i@xray_detectorEnergy_n_Fraction_i

xray_detectorEnergy_n_Level_i@xray_detectorEnergy_n_Level_i

xray_detectorEnergyLevelCount_n@xray_detectorEnergyLevelCount_n

xray_detectorFileNameTimeStamp@xray_detectorFileNameTimeStamp

xray_detectorNormal[X,Y,Z]_n@xray_detectorNormal[X,Y,Z]_n

xray_detectorOrigin[X,Y,Z]_n@xray_detectorOrigin[X,Y,Z]_n

xray_detectorPerpXrays_n@xray_detectorPerpXrays_n

xray_detectorResolution_n@xray_detectorResolution_n

xray_detectorSideLength_n@xray_detectorSideLength_n

xray_detectorSideTiltingAngle_n@xray_detectorSideTiltingAngle_n

xray_detectorSideTiltingAxis_n@xray_detectorSideTiltingAxis_n

xray_detectorXYwriteFormat@xray_detectorXYwriteFormat

xray_maxXrayCount@xray_maxXrayCount

xray_numberOfDetectors@xray_numberOfDetectors

xray_printDetectors@xray_printDetectors

xray_printMain@xray_printMain

xray_printSpecies@xray_printSpecies

xray_printXrays@xray_printXrays

xray_screenXrayBucketSize@xray_screenXrayBucketSize

xray_XrayDeterminism@xray_XrayDeterminism

[rp] 2