Index

.dump_checkpoint@.dump_checkpoint|seeIO
.dump_restart@.dump_restart|seeIO
adaptive mesh
adiabatic indices
angular coordinates
block , [*]
boundary conditions
Burn
algebra@algebra , [*]
enucDtFactor@enucDtFactor , [*]
odeStepper@odeStepper , [*]
useBurnTable@useBurnTable
useShockBurn@useShockBurn
computational domain
Conductivity
useConductivity@useConductivity
Config@Config , [*]
Cosmology
CosmologicalConstant@CosmologicalConstant
MaxScaleChange@MaxScaleChange
OmegaMatter@OmegaMatter
OmegaRadiation@OmegaRadiation
Cpp & Python units
diagnostics
ProtonEmission
ProtonEmission
ProtonImaging
ProtonImaging , [*] , [*]
XrayImaging
XrayImaging
Diffuse
useDiffuse@useDiffuse , [*]
useDiffuseTherm@useDiffuseTherm
useDiffuseVisc@useDiffuseVisc
Docker
double precision
Driver
dr_numPosdefVars@dr_numPosdefVars
dr_usePosdefComputeDt@dr_usePosdefComputeDt
Driver_abortFlash , [*] , [*] , [*]
Driver_abortFlashC
Driver_computeDt , [*] , [*]
Driver_evolveFlash , [*] , [*] , [*] , [*] , [*] , [*]
Driver_finalizeFlash
Driver_getDt
Driver_getElapsedWCTime
Driver_getNStep
Driver_getSimTime
Driver_initFlash , [*] , [*] , [*] , [*] , [*] , [*] , [*]
Driver_initParallel
Driver_sendOutputData
Driver_verifyInitDt
dtinit@dtinit
dtmax@dtmax , [*]
dtmin@dtmin
meshCopyCount@meshCopyCount
nend@nend
restart@restart
tmax@tmax
tstep_change_factor@tstep_change_factor
energy deposition
energy deposition
laser: 3D ray tracing in 2D domain
laser: beam cross section power structure
laser: beam definition and setup
laser: Cell average algorithm
laser: Cubic interpolation with piecewise parabolic ray tracing
laser: Cubic interpolation with Runge Kutta integration
laser: energy density
laser: implementation details (algorithm) , [*] , [*]
laser: power deposition
laser: proper beam placement , [*]
laser: pulse definition
laser: ray definition and setup , [*] , [*]
laser: ray grid inside beam , [*] , [*] , [*]
laser: ray tracing in 3D cylindrical domains
laser: synchronous and asynchronous ray tracing
EnergyDeposition
ed_adjustBeamsTargetIntensity@ed_adjustBeamsTargetIntensity , [*]
ed_adjustBySymmetryX@ed_adjustBySymmetryX
ed_adjustBySymmetryY@ed_adjustBySymmetryY
ed_adjustBySymmetryZ@ed_adjustBySymmetryZ
ed_adjustInitialRaySpeed@ed_adjustInitialRaySpeed
ed_beamsCheckExpandX@ed_beamsCheckExpandX
ed_beamsCheckExpandY@ed_beamsCheckExpandY
ed_beamsCheckExpandZ@ed_beamsCheckExpandZ
ed_cellStepTolerance@ed_cellStepTolerance
ed_cellTimeEnergyDeposition@ed_cellTimeEnergyDeposition
ed_cellWallThicknessFactor@ed_cellWallThicknessFactor
ed_computeGradNeleP@ed_computeGradNeleP
ed_computeGradNeleR@ed_computeGradNeleR
ed_computeGradNeleT@ed_computeGradNeleT
ed_computeGradNeleX@ed_computeGradNeleX
ed_computeGradNeleY@ed_computeGradNeleY
ed_computeGradNeleZ@ed_computeGradNeleZ
ed_createRaysExpandX@ed_createRaysExpandX , [*]
ed_createRaysExpandY@ed_createRaysExpandY , [*]
ed_createRaysExpandZ@ed_createRaysExpandZ , [*]
ed_crossSectionFunctionType_n@ed_crossSectionFunctionType_n
ed_cubicInterpolationZeroDerv@ed_cubicInterpolationZeroDerv
ed_enforcePositiveNele@ed_enforcePositiveNele
ed_enforcePositiveTele@ed_enforcePositiveTele
ed_gaussianCenterMajor_n@ed_gaussianCenterMajor_n
ed_gaussianCenterMinor_n@ed_gaussianCenterMinor_n
ed_gaussianExponent_n@ed_gaussianExponent_n
ed_gaussianRadiusMajor_n@ed_gaussianRadiusMajor_n
ed_gaussianRadiusMinor_n@ed_gaussianRadiusMinor_n
ed_gradOrder@ed_gradOrder
ed_gridDeltaSemiAxisMajor_n@ed_gridDeltaSemiAxisMajor_n
ed_gridDeltaSemiAxisMinor_n@ed_gridDeltaSemiAxisMinor_n
ed_gridnAngularTics_n@ed_gridnAngularTics_n
ed_gridnRadialTics_n@ed_gridnRadialTics_n
ed_gridnSemiAxisMajorTics_n@ed_gridnSemiAxisMajorTics_n
ed_gridnSemiAxisMinorTics_n@ed_gridnSemiAxisMinorTics_n
ed_gridType_n@ed_gridType_n
ed_ignoreBoundaryCondition_n@ed_ignoreBoundaryCondition_n
ed_laser3Din2D@ed_laser3Din2D , [*]
ed_laser3Din2DwedgeAngle@ed_laser3Din2DwedgeAngle
ed_laserIOMaxNumberOfPositions@ed_laserIOMaxNumberOfPositions
ed_laserIOMaxNumberOfRays@ed_laserIOMaxNumberOfRays
ed_lensSemiAxisMajor_n@ed_lensSemiAxisMajor_n
ed_lensX_n@ed_lensX_n
ed_lensY_n@ed_lensY_n
ed_lensZ_n@ed_lensZ_n
ed_maxRayCount@ed_maxRayCount
ed_numberOfBeams@ed_numberOfBeams
ed_numberOfPulses@ed_numberOfPulses , [*] , [*] , [*]
ed_numberOfRays_n@ed_numberOfRays_n
ed_numberOfSections_n@ed_numberOfSections_n , [*] , [*]
ed_power_n_i@ed_power_n_i
ed_powerStepTolerance@ed_powerStepTolerance
ed_printBeams@ed_printBeams
ed_printMain@ed_printMain
ed_printPulses@ed_printPulses
ed_printRays@ed_printRays
ed_pulseNumber_n@ed_pulseNumber_n
ed_rayZeroPower@ed_rayZeroPower
ed_RungeKuttaMethod@ed_RungeKuttaMethod
ed_saveOutOfDomainRays@ed_saveOutOfDomainRays
ed_semiAxisMajorTorsionAngle_n@ed_semiAxisMajorTorsionAngle_n
ed_semiAxisMajorTorsionAxis_n@ed_semiAxisMajorTorsionAxis_n
ed_targetSemiAxisMajor@ed_targetSemiAxisMajor , [*] , [*] , [*]
ed_targetSemiAxisMajor_n@ed_targetSemiAxisMajor_n
ed_targetSemiAxisMinor_n@ed_targetSemiAxisMinor_n
ed_targetX@ed_targetX
ed_targetX_n@ed_targetX_n
ed_targetY_n@ed_targetY_n
ed_targetZ_n@ed_targetZ_n
ed_time_n_i@ed_time_n_i
ed_useLaserIO@ed_useLaserIO
ed_useRayCoords2GetBlockID@ed_useRayCoords2GetBlockID
ed_velocityStepTolerance@ed_velocityStepTolerance
ed_wavelength_n@ed_wavelength_n
threadRayTrace@threadRayTrace
useEnergyDeposition@useEnergyDeposition
Eos
eintSwitch@eintSwitch , [*]
eos_coulumbMult@eos_coulumbMult
eos_maxNewton@eos_maxNewton
eos_singleSpeciesA@eos_singleSpeciesA , [*]
eos_singleSpeciesZ@eos_singleSpeciesZ , [*]
eos_tolerance@eos_tolerance
eosModeInit@eosModeInit , [*] , [*]
gamma@gamma , [*] , [*] , [*] , [*]
gammaEle@gammaEle
gammaIon@gammaIon
gammaRad@gammaRad
eos_specSesDblFmt@eos_specSesDblFmt
equation of state , [*]
equation of state
Eos@Eos
Eos_wrapped@Eos_wrapped
gamma-law
equation of state
, [*]
Helmholtz , [*]
multi-gamma , [*]
rhd-gamma
fidlr@fidlr
xflash3@xflash3
FIXEDBLOCKSIZE mode , [*] , [*]
Flash.h
flash.par@flash.par , [*] , [*] , [*]
FLASH_MPI1
flux conservation
geometry|seemesh
gmake@gmake
Makefile.h@Makefile.h
gmake@gmake
, [*]
Gravity
grav_boundary_type@grav_boundary_type
grav_boundary_type@grav_boundary_type , [*] , [*] , [*] , [*]
grav_boundary_type_x@grav_boundary_type_x
grav_boundary_type_x@grav_boundary_type_x
grav_boundary_type_y@grav_boundary_type_y
grav_boundary_type_y@grav_boundary_type_y
grav_boundary_type_z@grav_boundary_type_z
grav_boundary_type_z@grav_boundary_type_z
grv_bhAccErr@grv_bhAccErr
grv_bhAccErr@grv_bhAccErr , [*] , [*]
grv_bhEwaldAlwaysGenerate@grv_bhEwaldAlwaysGenerate
grv_bhEwaldFieldNxV42@grv_bhEwaldFieldNxV42
grv_bhEwaldFieldNxV42@grv_bhEwaldFieldNxV42
grv_bhEwaldFieldNyV42@grv_bhEwaldFieldNyV42
grv_bhEwaldFieldNyV42@grv_bhEwaldFieldNyV42
grv_bhEwaldFieldNzV42@grv_bhEwaldFieldNzV42
grv_bhEwaldFieldNzV42@grv_bhEwaldFieldNzV42
grv_bhEwaldFName@grv_bhEwaldFName
grv_bhEwaldFNameAccV42@grv_bhEwaldFNameAccV42
grv_bhEwaldFNamePotV42@grv_bhEwaldFNamePotV42
grv_bhEwaldNPer@grv_bhEwaldNPer
grv_bhEwaldNPer@grv_bhEwaldNPer
grv_bhEwaldNRefV42@grv_bhEwaldNRefV42
grv_bhEwaldNRefV42@grv_bhEwaldNRefV42 , [*]
grv_bhEwaldSeriesN@grv_bhEwaldSeriesN
grv_bhEwaldSeriesN@grv_bhEwaldSeriesN
grv_bhExtrnPotCenterX@grv_bhExtrnPotCenterX
grv_bhExtrnPotCenterX@grv_bhExtrnPotCenterX
grv_bhExtrnPotCenterY@grv_bhExtrnPotCenterY
grv_bhExtrnPotCenterY@grv_bhExtrnPotCenterY
grv_bhExtrnPotCenterZ@grv_bhExtrnPotCenterZ
grv_bhExtrnPotCenterZ@grv_bhExtrnPotCenterZ
grv_bhExtrnPotFile@grv_bhExtrnPotFile
grv_bhExtrnPotFile@grv_bhExtrnPotFile
grv_bhExtrnPotType@grv_bhExtrnPotType
grv_bhExtrnPotType@grv_bhExtrnPotType
grv_bhLinearInterpolOnlyV42@grv_bhLinearInterpolOnlyV42
grv_bhLinearInterpolOnlyV42@grv_bhLinearInterpolOnlyV42
grv_bhMAC@grv_bhMAC
grv_bhMAC@grv_bhMAC
grv_bhMPDegree@grv_bhMPDegree
grv_bhMPDegree@grv_bhMPDegree
grv_bhNewton@grv_bhNewton
grv_bhNewton@grv_bhNewton
grv_bhUseExternalPotential@grv_bhUseExternalPotential
grv_bhUsePoissonPotential@grv_bhUsePoissonPotential
grv_bhUseRelAccErr@grv_bhUseRelAccErr
grv_bhUseRelAccErr@grv_bhUseRelAccErr , [*]
grv_useExternalPotential@grv_useExternalPotential
useGravity@useGravity
grid
boundary|seeboundary conditions
Grid
convertToConsvdForMeshCalls@convertToConsvdForMeshCalls , [*] , [*] , [*]
convertToConsvdInMeshInterp@convertToConsvdInMeshInterp , [*] , [*] , [*] , [*]
grid
data averaging , [*]
Grid
derefine_cutoff_#@derefine_cutoff_#
eosMode@eosMode
eosModeInit@eosModeInit
flux_correct@flux_correct
geometry@geometry , [*] , [*]
gr_bhPhysMACComm@gr_bhPhysMACComm , [*] , [*] , [*]
gr_bhPhysMACTW@gr_bhPhysMACTW , [*] , [*] , [*]
gr_bhTreeLimAngle@gr_bhTreeLimAngle , [*]
gr_bhTreeSafeBox@gr_bhTreeSafeBox , [*] , [*]
gr_bhTWMaxQueueSize@gr_bhTWMaxQueueSize
gr_bhUnifiedTreeWalk@gr_bhUnifiedTreeWalk
gr_bhUseUnifiedTW@gr_bhUseUnifiedTW , [*]
gr_lrefineMaxRedDoByLogR@gr_lrefineMaxRedDoByLogR
gr_lrefineMaxRedDoByTime@gr_lrefineMaxRedDoByTime
gr_lrefineMaxRedLogBase@gr_lrefineMaxRedLogBase
gr_lrefineMaxRedRadiusFact@gr_lrefineMaxRedRadiusFact
gr_lrefineMaxRedTimeScale@gr_lrefineMaxRedTimeScale
gr_lrefineMaxRedTRef@gr_lrefineMaxRedTRef
gr_pfftDiffOpDiscretize@gr_pfftDiffOpDiscretize
gr_pmrpForceConsistency@gr_pmrpForceConsistency
Grid_advanceDiffusion
Grid_applyBCEdge , [*] , [*]
Grid_applyBCEdgeAllUnkVars , [*] , [*] , [*]
Grid_bcApplyToRegion , [*] , [*] , [*]
Grid_bcApplyToRegionSpecialized , [*] , [*] , [*] , [*]
Grid_conserveFluxes
Grid_fillGuardCells , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*]
Grid_getBlkBoundBox
Grid_getBlkCenterCoords , [*] , [*]
Grid_getBlkCornerID , [*]
Grid_getBlkData , [*] , [*] , [*]
Grid_getBlkIndexLimits , [*]
Grid_getBlkPhysicalSize , [*] , [*]
Grid_getBlkPtr
Grid_getBlkRefineLevel
Grid_getBlkType
Grid_getBlPtr
Grid_getCellCoords , [*] , [*] , [*]
Grid_getDeltas
Grid_getGeometry
Grid_getListOfBlocks , [*]
Grid_getPlaneData , [*]
Grid_getPointData , [*]
Grid_getRowData , [*]
Grid_getSingleCellVol
Grid_init , [*] , [*]
Grid_initDomain , [*]
Grid_mapParticlesToMesh , [*]
Grid_markRefineDerefine , [*] , [*]
Grid_markRefineSpecialized
Grid_pfft
Grid_pfftFinalize
Grid_pfftInit
Grid_putBlkData , [*]
Grid_restrictAllLevels
Grid_sendOutputData , [*] , [*]
Grid_solvePoisson
Grid_updateRefinement , [*] , [*] , [*]
grid
guardcells|seeguardcells
Grid
iGridSize@iGridSize
interpol_order@interpol_order , [*]
grid
interpolation , [*] , [*] , [*] , [*] , [*] , [*] , [*]
interpolation
order
Grid
jGridSize@jGridSize
kGridSize@kGridSize
lrefine_max@lrefine_max
max_particles_per_blk@max_particles_per_blk
mg_maxCorrections@mg_maxCorrections
mg_MaxResidualNorm@mg_MaxResidualNorm
mg_printNorm@mg_printNorm
mpole_2DSymmetryPlane@mpole_2DSymmetryPlane , [*]
mpole_3DAxisymmetry@mpole_3DAxisymmetry , [*]
mpole_DumpMoments@mpole_DumpMoments , [*]
mpole_IgnoreInnerZone@mpole_IgnoreInnerZone , [*]
mpole_InnerZoneResolution@mpole_InnerZoneResolution , [*]
mpole_InnerZoneSize@mpole_InnerZoneSize , [*]
mpole_Lmax@mpole_Lmax , [*] , [*] , [*] , [*]
mpole_MaxRadialZones@mpole_MaxRadialZones , [*]
mpole_PrintRadialInfo@mpole_PrintRadialInfo , [*]
mpole_subSample@mpole_subSample
mpole_ZoneExponent_n@mpole_ZoneExponent_n , [*]
mpole_ZoneRadiusFraction_n@mpole_ZoneRadiusFraction_n , [*]
mpole_ZoneScalar_n@mpole_ZoneScalar_n , [*]
mpole_ZoneType_n@mpole_ZoneType_n , [*]
Nblockx@Nblockx , [*] , [*]
Nblocky@Nblocky , [*] , [*]
Nblockz@Nblockz , [*]
pfft_setupOnce@pfft_setupOnce , [*]
grid
prolongation , [*]
Grid
refine_cutoff_#@refine_cutoff_#
refine_filter_#@refine_filter_#
refine_on_particle_count@refine_on_particle_count
refine_var_#@refine_var_# , [*]
grid
restriction , [*] , [*]
Grid
smlrho@smlrho
tagradius@tagradius
xl_boundary_type@xl_boundary_type , [*] , [*]
xmax@xmax , [*] , [*]
grid
xmin/xmax@xmin/xmax
Grid
xmin@xmin , [*]
xr_boundary_type@xr_boundary_type
ymax@ymax , [*] , [*]
grid
ymin/ymax@ymin/ymax
Grid
ymin@ymin , [*]
zmax@zmax
grid
zmin/zmax@zmin/zmax
Grid
zmin@zmin
Grid_getCellCoords@Grid_getCellCoords
guardcells
H5_USE_16_API@H5_USE_16_API , [*]
HDF5|seeIO
Hydro
CFL@CFL , [*] , [*]
chomboLikeUpdateSoln@chomboLikeUpdateSoln
hy_cflFallbackFactor@hy_cflFallbackFactor
hy_eosModeAfter@hy_eosModeAfter , [*]
hybrid_riemann@hybrid_riemann
HydroMain@HydroMain
ppm_modifystates@ppm_modifystates
use_avisc@use_avisc
use_cma_flattening@use_cma_flattening
use_steepening@use_steepening
I/O
IDL
incompressible
IO
.dump_checkpoint@.dump_checkpoint
.dump_particle_file@.dump_particle_file
.dump_plotfile@.dump_plotfile
.dump_restart@.dump_restart
alwaysComputeUserVars@alwaysComputeUserVars
alwaysRestrictCheckpoint@alwaysRestrictCheckpoint
checkpoint file
checkpointFileIntervalStep@checkpointFileIntervalStep
checkpointFileNumber@checkpointFileNumber
chkGuardCellsInput@chkGuardCellsInput
chkGuardCellsOutput@chkGuardCellsOutput
forced Plotfile
HDF5 , [*]
IO_getPrevScalar
IO_getScalar
IO_init , [*]
IO_output , [*] , [*]
IO_readUserArray
IO_setScalar , [*]
IO_writeCheckpoint , [*]
IO_writeIntegralQuantities , [*]
IO_writeParticles
IO_writePlotfile , [*]
IO_writeUserArray
output file names
outputSplitNum@outputSplitNum
particle file
particleFileNumber@particleFileNumber
plot_grid_var_1@plot_grid_var_1
plot_grid_var_2@plot_grid_var_2
plot_var_1@plot_var_1
plot_var_2@plot_var_2
plotfile
plotFileNumber@plotFileNumber , [*]
Ionize
dneimax@dneimax
dneimin@dneimin
tneimax@tneimax
tneimin@tneimin
kernel
Logfile
log_file@log_file
make@gmake
make realclean@make realclean
make@make
gmake clean@make clean
make@make
parallel build
Makefile.h
materials
viscosity|seeviscosity
MAXBLOCKS@MAXBLOCKS , [*]
memory , [*] , [*]
mesh
geometry
geometry
Cartesian
CARTESIAN@CARTESIAN
cylindrical
CYLINDRICAL@CYLINDRICAL
polar
POLAR@POLAR
spherical
SPHERICAL@SPHERICAL
refinement criteria
monitors
Logfile
Logfile_init
Logfile_stamp , [*] , [*] , [*]
Logfile_stampMessage
Logfile_writeSummary
Timers
Timers_create , [*]
Timers_getSummary
Timers_init
Timers_reset , [*] , [*]
Timers_start
Timers_stop
Multispecies
Multispecies_getAvg
Multispecies_getProperty
Multispecies_getSum
Multispecies_getSumFrac
Multispecies_getSumInv
Multispecies_getSumSqr
Multispecies_list
Multispecies_setProperty
Multispecies_unitTest
Navier-Stokes
NONFIXEDBLOCKSIZE mode , [*] , [*] , [*] , [*] , [*]
Opacity
op_absorbScale@op_absorbScale
op_emitScale@op_emitScale
op_transScale@op_transScale
PARAMESH , [*]
Particles
initializeParticleAtRestart@initializeParticleAtRestart
particle_attribute_1@particle_attribute_1
particle_attribute_2@particle_attribute_2
Particles_advance , [*] , [*] , [*] , [*] , [*]
Particles_computeDt
Particles_dump
Particles_init
Particles_initPositions , [*]
Particles_mapToMeshOneBlk
Particles_specifyMethods , [*]
Particles_unitTest
Particles_updateAttributes , [*]
pt_dtChangeToleranceDown@pt_dtChangeToleranceDown
pt_dtChangeToleranceUp@pt_dtChangeToleranceUp
pt_dtFactor@pt_dtFactor
pt_initialXMin@pt_initialXMin
pt_numX@pt_numX , [*]
pt_numy@pt_numy
pt_picPpc_1@pt_picPpc_1
useParticles@useParticles
Physical Constants
Physical Constants
CGS,CGS
MKS,MKS
PhysicalConstants
pc_unitsBase@pc_unitsBase
PhysicalConstants_get
PhysicalConstants_init , [*]
PhysicalConstants_list
PhysicalConstants_listUnits
PhysicalConstants_unitTest , [*]
physics
Cosmology
Cosmology_cdmPowerSpectrum
Cosmology_computeDeltaCrit
Cosmology_computeDt
Cosmology_computeVariance
Cosmology_getRedshift
Cosmology_massToLength
Cosmology_redshiftToTime
Cosmology_solveFriedmannEqn
Diffuse
Diffuse_solveScalar
Diffuse_therm
Eos
Eos , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*]
Eos_getData
Eos_init , [*]
Eos_putData
Eos_wrapped , [*] , [*] , [*] , [*] , [*] , [*] , [*] , [*]
EosMain
Tabulated
eos_tabEditSesameTables.F90 , [*] , [*]
eos_tabReadSesameTables.F90 , [*] , [*]
Gravity
Gravity_accelOneRow , [*] , [*]
Gravity_bhFillBotNode
Gravity_bhNodeContrib , [*]
Gravity_init
Gravity_potentialListOfBlocks
Hydro
Hydro_computeDt
materialProperties
Conductivity
Conductivity
Opacity
Opacity , [*]
RadTrans
RadTrans_mgdEFromT
RadTrans_sumEnergy
sourceTerms
Burn
Burn
Burn_computeDt
Burn_init
EnergyDeposition
EnergyDeposition
EnergyDeposition
utilities
PlasmaState
PlasmaStateMain
PlasmaState_getComposition
PlasmaState_ieEquilTime
PlasmaState_logLambda
PlasmaState_tau
proton emission
proton emission
proton detector screens
proton emission boxes
proton generation
proton imaging
proton imaging
implementation details (algorithm)
proton imaging: beam definition and setup
proton imaging: detector screen setup
proton imaging: moving protons through domain
proton imaging: proton definition and setup
proton imaging: proton specifications
proton imaging: recording protons on detector screen
proton imaging: time resolved proton imaging
ProtonEmission
pem_appendOldDetectorFiles@pem_appendOldDetectorFiles
pem_cellStepTolerance@pem_cellStepTolerance
pem_cellWallThicknessFactor@pem_cellWallThicknessFactor
pem_detailedTiming@pem_detailedTiming
pem_detectorCenter[X,Y,Z]_n@pem_detectorCenter[X,Y,Z]_n
pem_detectorFileNameTimeStamp@pem_detectorFileNameTimeStamp
pem_detectorNormal[X,Y,Z]_n@pem_detectorNormal[X,Y,Z]_n
pem_detectorPinholeDist2Det_n@pem_detectorPinholeDist2Det_n
pem_detectorPinholeRadius_n@pem_detectorPinholeRadius_n
pem_detectorSideLength_n@pem_detectorSideLength_n
pem_detectorSideTiltingAngle_n@pem_detectorSideTiltingAngle_n
pem_detectorSideTiltingAxis_n@pem_detectorSideTiltingAxis_n
pem_detectorXYwriteFormat@pem_detectorXYwriteFormat
pem_emissionAmplificationFactor@pem_emissionAmplificationFactor
pem_emissionBoxCornerL[X,Y,Z]_n@pem_emissionBoxCornerL[X,Y,Z]_n
pem_emissionBoxCornerU[X,Y,Z]_n@pem_emissionBoxCornerU[X,Y,Z]_n
pem_emissionConeCenter[X,Y,Z]@pem_emissionConeCenter[X,Y,Z]
pem_emissionConeHalfApexAngle@pem_emissionConeHalfApexAngle
pem_ignoreElectricalField@pem_ignoreElectricalField
pem_ignoreMagneticField@pem_ignoreMagneticField
pem_maxProtonCount@pem_maxProtonCount
pem_numberOfDetectors@pem_numberOfDetectors
pem_numberOfEmissionBoxes@pem_numberOfEmissionBoxes
pem_opaqueBoundaries@pem_opaqueBoundaries
pem_printDetectors@pem_printDetectors
pem_printMain@pem_printMain
pem_printProtons@pem_printProtons
pem_printProtonSources@pem_printProtonSources
pem_protonDeterminism@pem_protonDeterminism
pem_RungeKuttaMethod@pem_RungeKuttaMethod
pem_screenProtonBucketSize@pem_screenProtonBucketSize
pem_useParabolicApproximation@pem_useParabolicApproximation
threadProtonTrace@threadProtonTrace
useProtonEmission@useProtonEmission
ProtonImaging
pi_beamApertureAngle_n@pi_beamApertureAngle_n
pi_beamCapsule[X,Y,Z]_n@pi_beamCapsule[X,Y,Z]_n
pi_beamCapsuleRadius_n@pi_beamCapsuleRadius_n
pi_beamDetector_n@pi_beamDetector_n
pi_beamNoBoundaryCondition_n@pi_beamNoBoundaryCondition_n
pi_beamNumberOfProtons_n@pi_beamNumberOfProtons_n
pi_beamProtonEnergy_n@pi_beamProtonEnergy_n
pi_beamTarget[X,Y,Z]_n@pi_beamTarget[X,Y,Z]_n
pi_beamTime2Launch_n@pi_beamTime2Launch_n
pi_cellStepTolerance@pi_cellStepTolerance
pi_cellWallThicknessFactor@pi_cellWallThicknessFactor
pi_detectorAlignWRTbeamNr_n@pi_detectorAlignWRTbeamNr_n
pi_detectorCenter[X,Y,Z]_n@pi_detectorCenter[X,Y,Z]_n
pi_detectorDGwriteFormat@pi_detectorDGwriteFormat
pi_detectorDist2BeamCapsule_n@pi_detectorDist2BeamCapsule_n
pi_detectorFileNameTimeStamp@pi_detectorFileNameTimeStamp
pi_detectorNormal[X,Y,Z]_n@pi_detectorNormal[X,Y,Z]_n
pi_detectorPinholeDist2Det_n@pi_detectorPinholeDist2Det_n
pi_detectorPinholeRadius_n@pi_detectorPinholeRadius_n
pi_detectorSideLength_n@pi_detectorSideLength_n
pi_detectorSideTiltingAngle_n@pi_detectorSideTiltingAngle_n
pi_detectorSideTiltingAxis_n@pi_detectorSideTiltingAxis_n
pi_detectorXYwriteFormat@pi_detectorXYwriteFormat
pi_flagDomainMissingProtons@pi_flagDomainMissingProtons
pi_ignoreElectricalField@pi_ignoreElectricalField
pi_IOaddDetectorScreens@pi_IOaddDetectorScreens
pi_IOaddProtonsCapsule2Domain@pi_IOaddProtonsCapsule2Domain
pi_IOaddProtonsDomain2Screen@pi_IOaddProtonsDomain2Screen
pi_IOmaxBlockCrossingNumber@pi_IOmaxBlockCrossingNumber
pi_IOnumberOfProtons2Plot@pi_IOnumberOfProtons2Plot
pi_maxProtonCount@pi_maxProtonCount
pi_numberOfBeams@pi_numberOfBeams
pi_numberOfDetectors@pi_numberOfDetectors
pi_opaqueBoundaries@pi_opaqueBoundaries
pi_printBeams@pi_printBeams
pi_printDetectors@pi_printDetectors
pi_printMain@pi_printMain
pi_printProtons@pi_printProtons
pi_protonDeterminism@pi_protonDeterminism
pi_recordOffScreenProtons@pi_recordOffScreenProtons
pi_relativisticTracing@pi_relativisticTracing
pi_RungeKuttaMethod@pi_RungeKuttaMethod
pi_screenProtonBucketSize@pi_screenProtonBucketSize
pi_screenProtonDiagnostics@pi_screenProtonDiagnostics
pi_timeResolvedProtonImaging@pi_timeResolvedProtonImaging
pi_useIOprotonPlot@pi_useIOprotonPlot
pi_useParabolicApproximation@pi_useParabolicApproximation
threadProtonTrace@threadProtonTrace
useProtonImaging@useProtonImaging
RadTrans
rt_mgdFlCoef@rt_mgdFlCoef
rt_mgdFlMode@rt_mgdFlMode
rt_mgdNumGroups@rt_mgdNumGroups , [*]
rt_planckIntMethod@rt_planckIntMethod , [*]
rt_useMGD@rt_useMGD
Runge Kutta
RuntimeParameters
RuntimeParameters_get , [*]
RuntimeParameters_getPrev
RuntimeParameters_mapStrToInt , [*]
RuntimeParameters_set
sedov.dat@sedov.dat
sedov.log@sedov.log
setup
+default
-[123]d@\tt -[123]d
-append-parfiles@\tt -append-parfiles
-auto@\tt -auto
-cmake@\tt -cmake
-curvilinear@\tt -curvilinear
-debug@\tt -debug
-defines@\tt -defines
-fbs@\tt -fbs
-geometry@\tt -geometry
-gridinterpolation@-gridinterpolation
-gridinterpolation@\tt -gridinterpolation
-index-reorder@\tt -index-reorder
-library@\tt -library
-makefile@\tt -makefile
-makehide@\tt -makehide
-maxblocks@\tt -maxblocks
-n[xyz]b@\tt -n[xyz]b
-noclobber@\tt -noclobber
-nofbs@\tt -nofbs
-objdir@\tt -objdir
-opt@\tt -opt
-os@\tt -os
-parfile@\tt -parfile
-particlemethods-@-particlemethods
-portable@\tt -portable
-pyparfile@\tt -parfile
-site@\tt -site
-tau@\tt -tau
-test@\tt -test
-unit@\tt -unit
-unitsfile@\tt -unitsfile
-verbose@\tt -verbose
-with-library@\tt -with-library
-with-unit@\tt -with-unit
-without-library@\tt -without-library
-without-unit@\tt -without-unit
3t@\tt 3t
8wave@\tt 8wave
cartesian@\tt cartesian
chombo_amr@\tt chombo_amr
chombo_ug@\tt chombo_ug
cppapi@\tt cppapi
cube16@\tt cube16
cube32@\tt cube32
cube64@\tt cube64
curv-pm2@\tt curv-pm2
curvilinear@\tt curvilinear
cylindrical@\tt cylindrical
default@\tt default
ed_maxBeams@\tt ed_maxBeams
ed_maxPulses@\tt ed_maxPulses
fixedBlockSize@\tt fixedBlockSize
gravMgrid@\tt gravMgrid
gravMpole@\tt gravMpole
gravPfftNofbs@\tt gravPfftNofbs
Grid@\tt Grid , [*]
GridIndexOrder@\tt GridIndexOrder
hdf5@\tt hdf5
hdf5TypeIO@\tt hdf5TypeIO
IO@\tt IO , [*]
laser@\tt laser
longrange@\tt longrange
maxBlocks@\tt maxBlocks
mgd@\tt mgd
mgd_meshgroups@\tt mgd_meshgroups
mpi1@\tt mpi1
mpi2@\tt mpi2
mpole@\tt mpole
Mtmmmt@\tt Mtmmmt , [*]
nDim@\tt nDim
newMpole@\tt newMpole
noDefaultMpole@\tt noDefaultMpole
nofbs@\tt nofbs
noio@\tt noio
nolog@\tt nolog
noMgrid@\tt noMgrid
npg@\tt npg
nxb@\tt nxb
nyb@\tt nyb
nzb@\tt nzb
parallelIO@\tt parallelIO , [*]
ParameshLibraryMode@\tt ParameshLibraryMode
PfftSolver@\tt PfftSolver
pic@\tt pic
pm2@\tt pm2
pm3@\tt pm3
pm40@\tt pm40
pm4dev@\tt pm4dev
pm4dev_clean@\tt pm4dev_clean
pnetcdf@\tt pnetcdf
pnetcdfTypeIO@\tt pnetcdfTypeIO
polar@\tt polar
ptdens@\tt ptdens
ptio@\tt ptio
pureHydro@\tt pureHydro
python@\tt python
rnf@\tt rnf
serialIO@\tt serialIO
shortcuts , [*]
species@\tt species
spherical-pm2@\tt spherical-pm2
spherical@\tt spherical
SplitDriver@\tt SplitDriver
splitHydro@\tt splitHydro
supportPPMUpwind@\tt supportPPMUpwind
threadEosWithinBlock@\tt threadEosWithinBlock
threadHydroBlockList@\tt threadHydroBlockList
threadHydroWithinBlock@\tt threadHydroWithinBlock
threadMpoleBlockList@\tt threadMpoleBlockList
threadMpoleWithinBlock@\tt threadMpoleWithinBlock
threadRayTrace@\tt threadRayTrace
ug@\tt ug
uhd3t@\tt uhd3t
uhd@\tt uhd
unsplitHydro@\tt unsplitHydro
usm3t@\tt usm3t
usm@\tt usm
setup@setup , [*]
setup_params@setup_params
setups
example
sedov
shortcuts
Simulation
sim_maxTolCoeff0@sim_maxTolCoeff0
sim_maxTolCoeff1@sim_maxTolCoeff1
sim_maxTolCoeff2@sim_maxTolCoeff2
sim_schemeOrder@sim_schemeOrder
sim_smlRho@sim_smlRho
Simulation_adjustEvolution
Simulation_defineDomain , [*] , [*] , [*] , [*]
Simulation_getVarnameType
Simulation_init , [*]
Simulation_initBlock , [*] , [*] , [*]
Simulation_initSpecies , [*] , [*] , [*] , [*]
Simulation_mapIntToStr
Simulation_mapParticlesVar
Simulation_mapStrToInt
Simulation_data@Simulation_data
Simulation_init@Simulation_init
Simulation_initBlock@Simulation_initBlock , [*]
Simulation_initBlock@Simulation_initBlock
creating new
Stir
st_computeDt@st_computeDt , [*]
st_decay@st_decay
st_energy@st_energy
st_infilename@st_infilename , [*]
useStir@useStir
subunit
subunit
primary
Thomson scattering
Thomson scattering
laser: pulse definition
Thomson scattering: beam definition and setup
Thomson scattering: detector setup
Thomson scattering: ray definition and setup
Thomson scattering: ray specifications
Thomson scattering: recording rays at detector
ThomsonScattering
Beam Runtime Parameters@Beam Runtime Parameters
Detector Runtime Parameters@Detector Runtime Parameters
threadThscRayTrace@threadThscRayTrace
thsc_beamDetector_n@thsc_beamDetector_n
thsc_beamLens[X,Y,Z]_n@thsc_beamLens[X,Y,Z]_n
thsc_beamTarget[X,Y,Z]_n@thsc_beamTarget[X,Y,Z]_n
thsc_cellTimeEnergyDeposition@thsc_cellTimeEnergyDeposition
thsc_cellWallThicknessFactor@thsc_cellWallThicknessFactor
thsc_detectorApertureAngle_n@thsc_detectorApertureAngle_n , [*]
thsc_detectorCenter[X,Y,Z]_n@thsc_detectorCenter[X,Y,Z]_n
thsc_detectorDGwriteFormat@thsc_detectorDGwriteFormat
thsc_detectorFileNameTimeStamp@thsc_detectorFileNameTimeStamp
thsc_detectorLaserBeamNumber_n@thsc_detectorLaserBeamNumber_n
thsc_detectorLensSAMajor_n@thsc_detectorLensSAMajor_n
thsc_detectorLensX_n@thsc_detectorLensX_n
thsc_detectorLensY_n@thsc_detectorLensY_n
thsc_detectorLensZ_n@thsc_detectorLensZ_n
thsc_detectorNoRayDeflection_n@thsc_detectorNoRayDeflection_n
thsc_detectorNoRayPowerLoss_n@thsc_detectorNoRayPowerLoss_n
thsc_detectorNumberOfRays_n@thsc_detectorNumberOfRays_n
thsc_detectorNumberOfSpecPoints_n@thsc_detectorNumberOfSpecPoints_n
thsc_detectorSAMajorTorsionAngle_n@thsc_detectorSAMajorTorsionAngle_n
thsc_detectorSAMajorTorsionAxis_n@thsc_detectorSAMajorTorsionAxis_n
thsc_detectorScreenSpectralFlux_n@thsc_detectorScreenSpectralFlux_n
thsc_detectorScreenWavelengths_n@thsc_detectorScreenWavelengths_n
thsc_detectorSideLength_n@thsc_detectorSideLength_n
thsc_detectorSkipTimeResolve_n@thsc_detectorSkipTimeResolve_n
thsc_detectorTarget[X,Y,Z]_n@thsc_detectorTarget[X,Y,Z]_n
thsc_detectorTargetRadius_n@thsc_detectorTargetRadius_n
thsc_detectorTargetSAMajor_n@thsc_detectorTargetSAMajor_n
thsc_detectorTargetSAMinor_n@thsc_detectorTargetSAMinor_n
thsc_detectorTargetX_n@thsc_detectorTargetX_n
thsc_detectorTargetY_n@thsc_detectorTargetY_n
thsc_detectorTargetZ_n@thsc_detectorTargetZ_n
thsc_detectorUseRelativityTerm_n@thsc_detectorUseRelativityTerm_n
thsc_detectorWavelengthMax_n@thsc_detectorWavelengthMax_n
thsc_detectorWavelengthMin_n@thsc_detectorWavelengthMin_n
thsc_detectorWriteFormatX@thsc_detectorWriteFormatX
thsc_detectorWriteFormatY@thsc_detectorWriteFormatY
thsc_detectorXYwriteFormat@thsc_detectorXYwriteFormat
thsc_enforcePositiveNele@thsc_enforcePositiveNele
thsc_enforcePositiveTele@thsc_enforcePositiveTele
thsc_laserCrossSecFuncType_n@thsc_laserCrossSecFuncType_n
thsc_laserGaussCenterMajor_n@thsc_laserGaussCenterMajor_n
thsc_laserGaussCenterMinor_n@thsc_laserGaussCenterMinor_n
thsc_laserGaussExponent_n@thsc_laserGaussExponent_n
thsc_laserGaussRadiusMajor_n@thsc_laserGaussRadiusMajor_n
thsc_laserGaussRadiusMinor_n@thsc_laserGaussRadiusMinor_n
thsc_laserInitialRaySpeed_n@thsc_laserInitialRaySpeed_n
thsc_laserLensSAMajor_n@thsc_laserLensSAMajor_n
thsc_laserLensX_n@thsc_laserLensX_n
thsc_laserLensY_n@thsc_laserLensY_n
thsc_laserLensZ_n@thsc_laserLensZ_n
thsc_laserNoEnergyDeposition_n@thsc_laserNoEnergyDeposition_n
thsc_laserNumberOfRays_n@thsc_laserNumberOfRays_n
thsc_laserPolarizationAngle_n@thsc_laserPolarizationAngle_n
thsc_laserPulseNumber_n@thsc_laserPulseNumber_n
thsc_laserSAMajorTorsionAngle_n@thsc_laserSAMajorTorsionAngle_n
thsc_laserSAMajorTorsionAxis_n@thsc_laserSAMajorTorsionAxis_n
thsc_laserTargetSAMajor_n@thsc_laserTargetSAMajor_n
thsc_laserTargetSAMinor_n@thsc_laserTargetSAMinor_n
thsc_laserTargetX_n@thsc_laserTargetX_n
thsc_laserTargetY_n@thsc_laserTargetY_n
thsc_laserTargetZ_n@thsc_laserTargetZ_n
thsc_laserWavelength_n@thsc_laserWavelength_n
thsc_maxRayCount@thsc_maxRayCount , [*] , [*]
thsc_numberOfBeams@thsc_numberOfBeams
thsc_numberOfDetectors@thsc_numberOfDetectors , [*]
thsc_numberOfLaserBeams@thsc_numberOfLaserBeams
thsc_numberOfPulses@thsc_numberOfPulses , [*] , [*] , [*]
thsc_numberOfSections_n@thsc_numberOfSections_n , [*] , [*]
thsc_power_n_i@thsc_power_n_i
thsc_printBeams@thsc_printBeams
thsc_printDetectors@thsc_printDetectors , [*]
thsc_printEnergyInfo@thsc_printEnergyInfo
thsc_printLaserBeams@thsc_printLaserBeams
thsc_printMain@thsc_printMain , [*]
thsc_printPulses@thsc_printPulses , [*]
thsc_printRays@thsc_printRays
thsc_printSpecies@thsc_printSpecies
thsc_rayDeterminism@thsc_rayDeterminism
thsc_rayZeroPower@thsc_rayZeroPower
thsc_recordOffScreenRays@thsc_recordOffScreenRays
thsc_screenRayBucketSize@thsc_screenRayBucketSize
thsc_screenRayDiagnostics@thsc_screenRayDiagnostics
thsc_spectrumFileIntervalStep@thsc_spectrumFileIntervalStep , [*]
thsc_spectrumFileIntervalTime@thsc_spectrumFileIntervalTime , [*]
thsc_spectrumNpts_N@thsc_spectrumNpts_N
thsc_time_n_i@thsc_time_n_i
useThomsonScattering@useThomsonScattering , [*]
Timers
eachProcWritesSummary@eachProcWritesSummary
writeStatSummary@writeStatSummary
Turb
turb_c2@turb_c2
turb_stepSize@turb_stepSize
unit
variable type
variable
type
conserved
mass-specific
viscosity
viscosity
spitzer
Viscosity
useViscosity@useViscosity
visc_whichCoefficientIsConst@visc_whichCoefficientIsConst
XFLASH_DIR@XFLASH3_DIR
xray imaging
xray imaging
implementation details (algorithm)
xray imaging: detector screen setup and recording
xray imaging: X-ray definition
XrayImaging
threadXrayTrace@threadXrayTrace
useXrayImaging@useXrayImaging
xray_3Din2D@xray_3Din2D
xray_cellWallThicknessFactor@xray_cellWallThicknessFactor
xray_detectorAlignWRTorigin_n@xray_detectorAlignWRTorigin_n
xray_detectorCenter[X,Y,Z]_n@xray_detectorCenter[X,Y,Z]_n
xray_detectorDGwriteFormat@xray_detectorDGwriteFormat
xray_detectorEnergy_n_Fraction_i@xray_detectorEnergy_n_Fraction_i
xray_detectorEnergy_n_Level_i@xray_detectorEnergy_n_Level_i
xray_detectorEnergyLevelCount_n@xray_detectorEnergyLevelCount_n
xray_detectorFileNameTimeStamp@xray_detectorFileNameTimeStamp
xray_detectorNormal[X,Y,Z]_n@xray_detectorNormal[X,Y,Z]_n
xray_detectorOrigin[X,Y,Z]_n@xray_detectorOrigin[X,Y,Z]_n
xray_detectorPerpXrays_n@xray_detectorPerpXrays_n
xray_detectorResolution_n@xray_detectorResolution_n
xray_detectorSideLength_n@xray_detectorSideLength_n
xray_detectorSideTiltingAngle_n@xray_detectorSideTiltingAngle_n
xray_detectorSideTiltingAxis_n@xray_detectorSideTiltingAxis_n
xray_detectorXYwriteFormat@xray_detectorXYwriteFormat
xray_maxXrayCount@xray_maxXrayCount
xray_numberOfDetectors@xray_numberOfDetectors
xray_printDetectors@xray_printDetectors
xray_printMain@xray_printMain
xray_printSpecies@xray_printSpecies
xray_printXrays@xray_printXrays
xray_screenXrayBucketSize@xray_screenXrayBucketSize
xray_XrayDeterminism@xray_XrayDeterminism
[rp] 2